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 in 
https://doi.org/10.12688/f1000research.2-172.v2
Research Article metrics
Revised
Characterization of known protein complexes using k-connectivity and other topological measures
[version 2; peer review: 1 approved, 2 approved with reservations]
Suzanne R Gallagher, Debra S Goldberg
Peer Reviewers Lin Gao; Nassim Sohaee; Joel Bader
LATEST VERSION PUBLISHED 09 Oct 2015
https://doi.org/10.12688/f1000research.7146.1
Method Article metrics
AnalogExplorer2 – Stereochemistry sensitive graphical analysis of large analog series
[version 1; peer review: 2 approved]
Ye Hu, Bijun Zhang, Martin Vogt, Jürgen Bajorath
Peer Reviewers Peter Ertl; Carleton Sage
PUBLISHED 09 Oct 2015
https://doi.org/10.12688/f1000research.6724.1
Review metrics
Leishmania carbon metabolism in the macrophage phagolysosome- feast or famine?
[version 1; peer review: 3 approved]
Malcolm J. McConville, Eleanor C. Saunders, Joachim Kloehn, Michael J. Dagley
Peer Reviewers Syamal Roy; Marilyn Parsons; Norma W. Andrews and Maria Fernanda Laranjeira Silva
PUBLISHED 01 Oct 2015
https://doi.org/10.12688/f1000research.4591.3
Method Article metrics
Revised
Detecting miRNA Mentions and Relations in Biomedical Literature
[version 3; peer review: 2 approved, 1 approved with reservations]
Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
Peer Reviewers Sofie Van Landeghem; Filip Ginter; Robert Leaman
LATEST VERSION PUBLISHED 01 Oct 2015
https://doi.org/10.12688/f1000research.6508.1
Review metrics
Hot topics in biodiversity and climate change research
[version 1; peer review: 2 approved]
Barry W. Brook, Damien A. Fordham
Peer Reviewers Jonathan Rhodes; Bernhard Schmid
PUBLISHED 30 Sep 2015
https://doi.org/10.12688/f1000research.6836.2
Software Tool Article metrics
Revised
iCTNet2: integrating heterogeneous biological interactions to understand complex traits
[version 2; peer review: 2 approved]
Lili Wang, Daniel S. Himmelstein, Adam Santaniello, Mousavi Parvin, Sergio E. Baranzini
Peer Reviewers Amitabh Sharma; Gary D Bader
LATEST VERSION PUBLISHED 28 Sep 2015
https://doi.org/10.12688/f1000research.6924.1
Software Tool Article metrics
The khmer software package: enabling efficient nucleotide sequence analysis
[version 1; peer review: 2 approved, 1 approved with reservations]
Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown
Peer Reviewers Ewan Birney; Daniel S. Katz; Rob Patro
PUBLISHED 25 Sep 2015
https://doi.org/10.12688/f1000research.6653.1
Review metrics
Computer-aided drug discovery
[version 1; peer review: 3 approved]
Jürgen Bajorath
Peer Reviewers Catherine Peishoff; Michael S. Lajiness; Hans Matter
PUBLISHED 26 Aug 2015
https://doi.org/10.12688/f1000research.5951.2
Software Tool Article metrics
Revised
PRN: a preprint service for catalyzing R-fMRI and neuroscience related studies
[version 2; peer review: 2 approved, 1 approved with reservations]
Chao-gan Yan, Qingyang Li, Lei Gao
Peer Reviewers Ze Wang; Wei Gao; Krzysztof Gorgolewski
LATEST VERSION PUBLISHED 19 Aug 2015
https://doi.org/10.12688/f1000research.6925.1
Software Tool Article metrics
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
[version 1; peer review: 2 approved]
Raivo Kolde, Jaak Vilo
Peer Reviewers Shaillay Dogra; Hilary Ann Coller
PUBLISHED 18 Aug 2015
https://doi.org/10.12688/f1000research.6767.1
Software Tool Article metrics
CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API
[version 1; peer review: 2 approved]
Keiichiro Ono, Tanja Muetze, Georgi Kolishovski, Paul Shannon, Barry Demchak
Peer Reviewers Sergey Nepomnyachiy; Guanming Wu
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.6773.1
Software Tool Article metrics
SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks
[version 1; peer review: 2 approved]
Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards
Peer Reviewers Ulrich Stelzl; Srikrishna Subramanian and Gurmeet Kaur
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.4392.2
Software Tool Article metrics
Update
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
[version 2; peer review: 3 approved]
John H. Morris, Samad Lotia, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E Ferrin
Peer Reviewers Jiguang Wang; Thomas Kelder; Tamara Munzner
LATEST VERSION PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.6797.1
Software Tool Article metrics
CySpanningTree: Minimal Spanning Tree computation in Cytoscape
[version 1; peer review: 1 approved, 1 approved with reservations]
Faizaan Shaik, Srikanth Bezawada, Neena Goveas
Peer Reviewers Shaillay Dogra; Ankush Sharma
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.5930.2
Opinion Article metrics
Revised
Rampant software errors may undermine scientific results
[version 2; peer review: 2 approved]
David A. W. Soergel
Peer Reviewers C. Titus Brown; Daniel S. Katz
LATEST VERSION PUBLISHED 29 Jul 2015
https://doi.org/10.12688/f1000research.6167.1
Review metrics
A developmental biologist’s journey to rediscover the Zen of plant physiology
[version 1; peer review: 3 approved]
José R. Dinneny
Peer Reviewers Christophe Maurel; David Salt; Jan Traas
PUBLISHED 16 Jul 2015
https://doi.org/10.12688/f1000research.6570.2
Method Article metrics
Revised
Longitudinal variations of brain functional connectivity: A case report study based on a mouse model of epilepsy
[version 2; peer review: 2 approved]
A. Erramuzpe, J. M. Encinas, A. Sierra, M. Maletic-Savatic, A.L. Brewster, Anne E. Anderson, S. Stramaglia, Jesus M. Cortes
Peer Reviewers Roma Siugzdaite; Ruedi Stoop
LATEST VERSION PUBLISHED 16 Jul 2015
https://doi.org/10.12688/f1000research.5773.3
Research Article metrics
Revised
ActivePapers: a platform for publishing and archiving computer-aided research
[version 3; peer review: 3 approved]
Konrad Hinsen
Peer Reviewers Neil Chue Hong; Mercè Crosas and Vito D'Orazio; Carl Boettiger
LATEST VERSION PUBLISHED 14 Jul 2015
https://doi.org/10.12688/f1000research.6478.1
Research Article metrics
Journal ratings as predictors of articles quality in Arts, Humanities and Social Sciences: an analysis based on the Italian Research Evaluation Exercise
[version 1; peer review: 3 approved]
Andrea Bonaccorsi, Tindaro Cicero, Antonio Ferrara, Marco Malgarini
Peer Reviewers Geoffrey Williams; Alesia Zuccala; Chiara Faggiolani and Domenica Fioredistella Iezzi
PUBLISHED 07 Jul 2015
https://doi.org/10.12688/f1000research.6181.2
Opinion Article metrics
Revised
Finding small molecules for the ‘next Ebola’
[version 2; peer review: 2 approved]
Sean Ekins, Christopher Southan, Megan Coffee
Peer Reviewers Qiaoying Zeng; Martin Zacharias
LATEST VERSION PUBLISHED 07 Jul 2015
901-920 of 1,017 ARTICLES
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