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https://doi.org/10.12688/f1000research.9206.1
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Top 10 metrics for life science software good practices
[version 1; peer review: 2 approved]
Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob W.W. Hooft, Rafael C. Jiménez, Brane Leskošek, Brett G. Olivier, Jan Stourac, Radka Svobodová Vařeková, Thomas Van Parys, Daniel Vaughan
Peer Reviewers Pedro L. Fernandes; Bruno Gaëta
PUBLISHED 16 Aug 2016
https://doi.org/10.12688/f1000research.8987.2
Software Tool Article metrics
Revised
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
[version 2; peer review: 5 approved]
Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth
Peer Reviewers Conrad J. Burden; Nick Schurch; Devon P. Ryan; Tsung Fei Khang; Steve Lianoglou
LATEST VERSION PUBLISHED 02 Aug 2016
https://doi.org/10.12688/f1000research.8829.1
Review metrics
An overview of cutaneous T cell lymphomas
[version 1; peer review: 2 approved]
Nooshin Bagherani, Bruce R. Smoller
Peer Reviewers Mary Jo Lechowicz; Stefano A. Pileri
PUBLISHED 28 Jul 2016
https://doi.org/10.12688/f1000research.9090.1
Software Tool Article metrics
AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations
[version 1; peer review: 2 approved]
Mike Kucera, Ruth Isserlin, Arkady Arkhangorodsky, Gary D. Bader
Peer Reviewers Pablo Porras Millán; Harm Nijveen
PUBLISHED 15 Jul 2016
https://doi.org/10.12688/f1000research.8846.1
Review metrics
Recent advances in phototherapy for psoriasis
[version 1; peer review: 2 approved]
Mio Nakamura, Benjamin Farahnik, Tina Bhutani
Peer Reviewers Joel Gelfand; Steven R Feldman
PUBLISHED 13 Jul 2016
https://doi.org/10.12688/f1000research.8247.1
Review metrics
Recent advances in molecular genetics of melanoma progression: implications for diagnosis and treatment
[version 1; peer review: 3 approved]
Iwei Yeh
Peer Reviewers Heinz Kutzner; Lyn Duncan; Pedram Gerami
PUBLISHED 28 Jun 2016
https://doi.org/10.12688/f1000research.8584.1
Review metrics
Recent advances in understanding ichthyosis pathogenesis
[version 1; peer review: 2 approved]
Nareh V. Marukian, Keith A. Choate
Peer Reviewers Masashi Akiyama; Anna Bruckner
PUBLISHED 24 Jun 2016
https://doi.org/10.12688/f1000research.9022.1
Software Tool Article metrics
ddpcr: an R package and web application for analysis of droplet digital PCR data
[version 1; peer review: 2 approved]
Dean Attali, Roza Bidshahri, Charles Haynes, Jennifer Bryan
Peer Reviewers Timothy J. Triche Jr; Stephanie L. Hazlitt and Andy Teucher
PUBLISHED 17 Jun 2016
https://doi.org/10.12688/f1000research.7476.3
Software Tool Article metrics
Revised
Semi-automated Modular Program Constructor for physiological modeling: Building cell and organ models
[version 3; peer review: 2 approved]
Bartholomew Jardine, Gary M. Raymond, James B. Bassingthwaighte
Peer Reviewers Dagmar Waltemath; Vanessa Díaz-Zuccarini
LATEST VERSION PUBLISHED 16 Jun 2016
https://doi.org/10.12688/f1000research.8964.1
Software Tool Article metrics
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
[version 1; peer review: 3 approved]
Alexandra Popa, Kevin Lebrigand, Agnes Paquet, Nicolas Nottet, Karine Robbe-Sermesant, Rainer Waldmann, Pascal Barbry
Peer Reviewers Olivier Namy and Pierre Bertin; Audrey M Michel; Ghislain Bidaut
PUBLISHED 09 Jun 2016
https://doi.org/10.12688/f1000research.7574.1
Review metrics
Toxic epidermal necrolysis
[version 1; peer review: 3 approved]
Wolfram Hoetzenecker, Tarun Mehra, Ieva Saulite, Martin Glatz, Peter Schmid-Grendelmeier, Emmanuella Guenova, Antonio Cozzio, Lars E. French
Peer Reviewers Georg Stary; Areta Kowal-Vern; Yuan-Tsong Chen
PUBLISHED 20 May 2016
https://doi.org/10.12688/f1000research.7958.1
Review metrics
Central control of body temperature
[version 1; peer review: 3 approved]
Shaun F. Morrison
Peer Reviewers Robin M McAllen and Michael J McKinley; Matteo Cerri; Andrej A Romanovsky
PUBLISHED 12 May 2016
https://doi.org/10.12688/f1000research.8382.2
Editorial metrics NOT PEER REVIEWED
Revised
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping
[version 2; peer review: not peer reviewed]
Ben Busby, Matthew Lesko, August 2015 and January 2016 Hackathon participants, Lisa Federer
LATEST VERSION PUBLISHED 09 May 2016
https://doi.org/10.12688/f1000research.7927.1
Review metrics
Recent advances in understanding psoriasis
[version 1; peer review: 2 approved]
Franziska C. Eberle, Jürgen Brück, Julia Holstein, Kiyoshi Hirahara, Kamran Ghoreschi
Peer Reviewers Thomas Herzinger; Mario Fabri
PUBLISHED 28 Apr 2016
https://doi.org/10.12688/f1000research.8402.1
Software Tool Article metrics
CyLineUp: A Cytoscape app for visualizing data in network small multiples
[version 1; peer review: 2 approved]
Maria Cecília D. Costa, Thijs Slijkhuis, Wilco Ligterink, Henk W.M. Hilhorst, Dick de Ridder, Harm Nijveen
Peer Reviewers Alexander R Pico; Oren Tzfadia
PUBLISHED 11 Apr 2016
https://doi.org/10.12688/f1000research.6769.2
Software Tool Article metrics
Revised
Finding the shortest path with PesCa: a tool for network reconstruction
[version 2; peer review: 2 approved, 2 approved with reservations]
Giovanni Scardoni, Gabriele Tosadori, Sakshi Pratap, Fausto Spoto, Carlo Laudanna
Peer Reviewers Ferenc Jordán; Ankush Sharma; Anna Zhukova; Salvatore Alaimo
LATEST VERSION PUBLISHED 07 Apr 2016
https://doi.org/10.12688/f1000research.7931.1
Software Tool Article metrics
FreeSASA: An open source C library for solvent accessible surface area calculations
[version 1; peer review: 2 approved]
Simon Mitternacht
Peer Reviewers Simon J. Hubbard; Yaoqi Zhou and Yuedong Yang
PUBLISHED 18 Feb 2016
https://doi.org/10.12688/f1000research.7120.1
Review metrics
Recent advances in understanding urethral lichen sclerosus
[version 1; peer review: 3 approved]
Altaf Mangera, Nadir Osman, Christopher R. Chapple
Peer Reviewers Andrew C. Peterson; Lee C. Zhao; Tang Ngee Shim
PUBLISHED 22 Jan 2016
https://doi.org/10.12688/f1000research.6852.2
Software Tool Article metrics
Revised
CyAnimator: Simple Animations of Cytoscape Networks
[version 2; peer review: 3 approved]
John H. Morris, Dhameliya Vijay, Steven Federowicz, Alexander R. Pico, Thomas E. Ferrin
Peer Reviewers Giovanni Scardoni; Nathan Salomonis; Piet Molenaar
LATEST VERSION PUBLISHED 30 Dec 2015
https://doi.org/10.12688/f1000research.7647.1
Software Tool Article metrics
CausalTrail: Testing hypothesis using causal Bayesian networks
[version 1; peer review: 2 approved]
Daniel Stöckel, Florian Schmidt, Patrick Trampert, Hans-Peter Lenhof
Peer Reviewers Maxime Gasse; Vishakh Hegde
PUBLISHED 30 Dec 2015
81-100 of 128 ARTICLES
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