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41-57 of 57 ARTICLES
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https://doi.org/10.12688/f1000research.12342.2
Opinion Article metrics
Revised
The future of metabolomics in ELIXIR
[version 2; peer review: 3 approved]
Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-Garcia, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K. Moschonas, Steffen Neumann, Claire O’Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
Peer Reviewers Charles F. Burant; Carl Brunius; Emmanuel Mikros
  • Funder
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 30 Oct 2017
https://doi.org/10.12688/f1000research.12332.1
Opinion Article metrics
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training
[version 1; peer review: 2 approved]
Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via
Peer Reviewers Jason J. Williams; Kim T. Gurwitz
  • Funder
  • ELIXIR-EXCELERATE
PUBLISHED 24 Aug 2017
https://doi.org/10.12688/f1000research.12168.1
Method Article metrics
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data
[version 1; peer review: 2 approved]
Chao Zhang, Jochem Bijlard, Christine Staiger, Serena Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino Da Silva Santos, Jeroen Belien, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond Fijneman, J. Dylan Spalding, Sanne Abeln
Peer Reviewers Hervé Ménager; Gilbert S. Omenn
  • Funders
  • CTMM-TraIT
  • Horizon 2020
PUBLISHED 16 Aug 2017
https://doi.org/10.12688/f1000research.11718.1
Opinion Article metrics
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
[version 1; peer review: 3 approved]
Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble
Peer Reviewers Erin A. Becker; Anelda P. van der Walt and Juan Steyn; Laurent Gatto
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11837.1
Opinion Article metrics
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
[version 1; peer review: 4 approved, 1 approved with reservations]
L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone, M. Thurston, M.R. Viant, C.L. Winder, C.A. Goble, C.P. Ponting, G. Rustici
Peer Reviewers Michelle D. Brazas; Patricia M. Palagi; Celia W.G. van Gelder; Nicola J. Mulder; Manuel Corpas
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 21 Jun 2017
https://doi.org/10.12688/f1000research.11407.1
Opinion Article metrics
Four simple recommendations to encourage best practices in research software
[version 1; peer review: 3 approved]
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, Björn Grüning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, Daniel S. Katz, Brane Leskošek, Federico López Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola Mulder, Yasset Perez-Riverol, Robert Pergl, Horst Pichler, Bernard Pope, Ferran Sanz, Maria V. Schneider, Victoria Stodden, Radosław Suchecki, Radka Svobodová Vařeková, Harry-Anton Talvik, Ilian Todorov, Andrew Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
Peer Reviewers Roberto Di Cosmo; Gregory V. Wilson; Stefanie Betz
  • Funders
  • ELIXIR-EXCELERATE
  • EMBL-ABR
  • Netherlands eScience Center
  • CORBEL
  • Software Sustainability Institute
PUBLISHED 13 Jun 2017
https://doi.org/10.12688/f1000research.11751.1
Opinion Article metrics
A community proposal to integrate proteomics activities in ELIXIR
[version 1; peer review: 2 approved]
Juan Antonio Vizcaíno, Mathias Walzer, Rafael C. Jiménez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J.R. Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, Martin Eisenacher, Lennart Martens, Oliver Kohlbacher
Peer Reviewers Felix Elortza; Chuming Chen
  • Funder
  • Horizon 2020
PUBLISHED 13 Jun 2017
https://doi.org/10.12688/f1000research.10473.2
Method Article metrics
Revised
An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK
[version 2; peer review: 2 approved, 1 approved with reservations]
John M. Hancock, Alf Game, Chris P. Ponting, Carole A. Goble
Peer Reviewers Christine Durinx; Alfonso Valencia; Janet Kelso
  • Funders
  • Medical Research Council
  • Natural Environment Research Council
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 20 Mar 2017
https://doi.org/10.12688/f1000research.9656.2
Method Article metrics
Revised
Identifying ELIXIR Core Data Resources
[version 2; peer review: 2 approved]
Christine Durinx, Jo McEntyre, Ron Appel, Rolf Apweiler, Mary Barlow, Niklas Blomberg, Chuck Cook, Elisabeth Gasteiger, Jee-Hyub Kim, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Alfonso Valencia
Peer Reviewers Helen M. Berman; Maryann E. Martone
LATEST VERSION PUBLISHED 09 Mar 2017
https://doi.org/10.12688/f1000research.10443.1
Method Article metrics
ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services
[version 1; peer review: 1 approved, 2 approved with reservations]
Espen Mikal Robertsen, Hubert Denise, Alex Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen
Peer Reviewers Marla I. Trindade and Leonardo van Zyl; Takashi Gojobori; Anders Blomberg
  • Funders
  • ELIXIR
  • EMBL-EBI
  • Universitetet i Tromsø
PUBLISHED 23 Jan 2017
https://doi.org/10.12688/f1000research.9794.1
Software Tool Article metrics
The ISMARA client
[version 1; peer review: 2 approved]
Panu Artimo, Séverine Duvaud, Mikhail Pachkov, Vassilios Ioannidis, Erik van Nimwegen, Heinz Stockinger
Peer Reviewers Carsten O. Daub; Josep Lluís Gelpi
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation
  • Universität Basel
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
PUBLISHED 15 Dec 2016
https://doi.org/10.12688/f1000research.10221.1
Software Tool Article metrics
Integration of EGA secure data access into Galaxy
[version 1; peer review: 2 approved]
Youri Hoogstrate, Chao Zhang, Alexander Senf, Jochem Bijlard, Saskia Hiltemann, David van Enckevort, Susanna Repo, Jaap Heringa, Guido Jenster, Remond J.A. Fijneman, Jan-Willem Boiten, Gerrit A. Meijer, Andrew Stubbs, Jordi Rambla, Dylan Spalding, Sanne Abeln
Peer Reviewers Hervé Ménager; Anton Nekrutenko
  • Funders
  • ELIXIR
  • ELIXIR-EXCELERATE
  • CTMM-TraIT
  • European Molecular Biology Laboratory
PUBLISHED 12 Dec 2016
https://doi.org/10.12688/f1000research.9206.1
Opinion Article metrics
Top 10 metrics for life science software good practices
[version 1; peer review: 2 approved]
Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob W.W. Hooft, Rafael C. Jiménez, Brane Leskošek, Brett G. Olivier, Jan Stourac, Radka Svobodová Vařeková, Thomas Van Parys, Daniel Vaughan
Peer Reviewers Pedro L. Fernandes; Bruno Gaëta
PUBLISHED 16 Aug 2016
https://doi.org/10.12688/f1000research.7587.2
Editorial metrics NOT PEER REVIEWED
Update
The ELIXIR channel in F1000Research
[version 2; peer review: not peer reviewed]
Niklas Blomberg, Arlindo Oliveira, Barend Mons, Bengt Persson, Inge Jonassen
LATEST VERSION PUBLISHED 04 May 2016
https://doi.org/10.12688/f1000research.7911.1
Research Article metrics
Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources
[version 1; peer review: 3 approved]
David Bousfield, Johanna McEntyre, Sameer Velankar, George Papadatos, Alex Bateman, Guy Cochrane, Jee-Hyub Kim, Florian Graef, Vid Vartak, Blaise Alako, Niklas Blomberg
Peer Reviewers Mark Parsons; Timothy W. Clark; Ben Johnson
PUBLISHED 11 Feb 2016
https://doi.org/10.12688/f1000research.6009.2
Research Article metrics
Revised
The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands
[version 2; peer review: 2 approved, 1 approved with reservations]
Lars Eijssen, Chris T. Evelo, Ruben Kok, Barend Mons, Rob W.W. Hooft, and the other founding members of DTL Data (see Acknowledgements)
Peer Reviewers Steffi Suhr; Karin Verspoor; Bryn Williams-Jones
LATEST VERSION PUBLISHED 06 Jan 2016
https://doi.org/10.12688/f1000research.7536.1
Software Tool Article metrics
BioShaDock: a community driven bioinformatics shared Docker-based tools registry
[version 1; peer review: 2 approved]
François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin
Peer Reviewers Rodrigo Lopez; Björn A. Grüning
PUBLISHED 14 Dec 2015
41-57 of 57 ARTICLES
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