Hackathons

Hackathons

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https://doi.org/10.12688/f1000research.11429.1
Research Article metrics
Community and Code: Nine Lessons from Nine NESCent Hackathons
[version 1; peer review: 1 approved, 1 approved with reservations]
Arlin Stoltzfus, Michael Rosenberg, Hilmar Lapp, Aidan Budd, Karen Cranston, Enrico Pontelli, Shann Oliver, Rutger A. Vos
Peer Reviewers Eva Amsen; Cameron Neylon
  • Funder
  • National Evolutionary Synthesis Center
PUBLISHED 06 Jun 2017
https://doi.org/10.12688/f1000research.9762.1
Software Tool Article metrics
Viewing RNA-seq data on the entire human genome
[version 1; peer review: 3 approved]
Eric M. Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby
Peer Reviewers Chase A. Miller; Christopher J. Fields; Philip Ewels
  • Funder
  • National Institutes of Health
PUBLISHED 28 Apr 2017
https://doi.org/10.12688/f1000research.10964.2
Opinion Article metrics
Revised
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
[version 2; peer review: 2 approved]
hackseq Organizing Committee 2016
Peer Reviewers Kate L. Hertweck; Jiarong Guo
LATEST VERSION PUBLISHED 10 Apr 2017
https://doi.org/10.12688/f1000research.11254.1
Software Tool Article metrics
DangerTrack: A scoring system to detect difficult-to-assess regions
[version 1; peer review: 2 approved, 1 approved with reservations]
Igor Dolgalev, Fritz Sedlazeck, Ben Busby
Peer Reviewers Melissa A. Gymrek and Nima Mousavi; Justin M. Zook; Andrew Carroll
  • Funders
  • U.S. National Library of Medicine
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 07 Apr 2017
https://doi.org/10.12688/f1000research.9837.1
Software Tool Article metrics
Extending TCGA queries to automatically identify analogous genomic data from dbGaP
[version 1; peer review: 2 approved, 1 approved with reservations]
Erin K. Wagner, Satyajeet Raje, Liz Amos, Jessica Kurata, Abhijit S. Badve, Yingquan Li, Ben Busby
Peer Reviewers Yussanne Ma and Victoria Trinh; Konstantinos Krampis; Tsung-Jung Wu
  • Funders
  • U.S. National Library of Medicine
  • Frances Berger Foundation Fellowship
  • Ramesh Kesanupalli Family
  • Beckman Research Institute, City of Hope
PUBLISHED 24 Mar 2017
https://doi.org/10.12688/f1000research.8290.2
Software Tool Article metrics
Revised
dbVar structural variant cluster set for data analysis and variant comparison
[version 2; peer review: 2 approved]
Lon Phan, Jeffrey Hsu, Le Quang Minh Tri, Michaela Willi, Tamer Mansour, Yan Kai, John Garner, John Lopez, Ben Busby
Peer Reviewers Lihua Julie Zhu; Justin M. Zook
LATEST VERSION PUBLISHED 28 Feb 2017
https://doi.org/10.12688/f1000research.8684.1
Software Tool Article metrics
A cloud-based learning environment for comparing RNA-seq aligners
[version 1; peer review: 2 approved with reservations]
Elizabeth Baskin, Peter DeFord, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby
Peer Reviewers Malachi Griffith; Timothy I. Shaw
PUBLISHED 13 May 2016
https://doi.org/10.12688/f1000research.8382.2
Editorial metrics NOT PEER REVIEWED
Revised
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping
[version 2; peer review: not peer reviewed]
Ben Busby, Matthew Lesko, August 2015 and January 2016 Hackathon participants, Lisa Federer
LATEST VERSION PUBLISHED 09 May 2016
https://doi.org/10.12688/f1000research.8288.1
Software Tool Article metrics
MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis
[version 1; peer review: 3 approved]
Eric Moyer, Megan Hagenauer, Matthew Lesko, Felix Francis, Oscar Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby
Peer Reviewers John Didion; Sahar Al Seesi; Tomasz Adamusiak
PUBLISHED 13 Apr 2016
21-29 of 29 ARTICLES
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