Bioconductor
BioC
Method Article
metrics
A Bioconductor/R Workflow for the Detection and Visualization of Differential Chromatin Loops
[version 1; peer review: 3 approved, 1 approved with reservations]
Peer Reviewers
Benjamin Soibam;
Vanessa Vermeirssen;
Raúl de Haro Blázquez;
Frank Johannes and Luca Schlegel
- Funders
- National Science Foundation Graduate Research Fellowship Program
- National Institutes of Health
- Wellcome Trust
- Chan Zuckerberg Initiative
- Howard Hughes Medical Institute Gilliam Fellows Program
Software Tool Article
metrics
AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines
[version 1; peer review: 2 approved]
Peer Reviewers
Fabricio Almeida-Silva;
Zachary S.L Foster
- Funder
- National Human Genome Research Institute
Method Article
metrics
Revised
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Michael D Morgan;
Koen Van den berge;
Anna Alemany, Xuan Quy Nguyen and Noëlle Dommann
- Funders
- National Health and Medical Research Council
- Chan Zuckerberg Initiative
- Medical Research Future Fund
Software Tool Article
metrics
Revised
HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas
[version 2; peer review: 3 approved]
Peer Reviewers
Mazdak Salavati;
Laurent Gatto;
Yasin Kaymaz
- Funders
- National Heart, Lung, and Blood Institute
- National Institutes of Health
Software Tool Article
metrics
periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA
[version 1; peer review: 1 approved, 3 approved with reservations]
Peer Reviewers
Ilya Ioshikhes;
Sabarinathan Radhakrishnan;
Eugene Korotkov;
Boris Lenhard
- Funders
- Wellcome Trust Senior Research Fellowship
- Medical Research Council DTP studentship