Nanopore Analysis

Nanopore Analysis

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21-36 of 36 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.25126.1
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Mycobiome analysis in fungal infected formalin-fixed and paraffin-embedded tissues for identification of pathogenic fungi: a pilot study
[version 1; peer review: 1 approved, 1 approved with reservations]
Taebum Lee, Hee Young Na, Sun-ju Byeon, Kyoung-Mee Kim, Hey Seung Lee, Sung-Hye Park, Ji-Young Choe, Kyoung Chan Choi
Peer Reviewers Wissam Faour; Chengqiang Wang
  • Funder
  • Hallym University
PUBLISHED 22 Jul 2020
https://doi.org/10.12688/f1000research.21570.1
Research Article metrics
Nanopore long reads enable the first complete genome assembly of a Malaysian Vibrio parahaemolyticus isolate bearing the pVa plasmid associated with acute hepatopancreatic necrosis disease
[version 1; peer review: 1 approved with reservations, 1 not approved]
Han Ming Gan, Christopher M Austin
Peer Reviewers Ballamoole Krishna Kumar; Tomoo Sawabe
PUBLISHED 16 Dec 2019
https://doi.org/10.12688/f1000research.16734.3
Data Note metrics
Revised
Draft genome assembly and transcriptome sequencing of the golden algae Hydrurus foetidus (Chrysophyceae)
[version 3; peer review: 2 approved]
Jon Bråte, Janina Fuss, Shruti Mehrotra, Kjetill S. Jakobsen, Dag Klaveness
Peer Reviewers Daniela Beisser and Stephan Majda; Blake T. Hovde
  • Funder
  • Norges Forskningsråd
LATEST VERSION PUBLISHED 07 Oct 2019
https://doi.org/10.12688/f1000research.16817.2
Research Article metrics
Revised
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
[version 2; peer review: 2 approved, 3 approved with reservations]
Anna Cuscó, Carlotta Catozzi, Joaquim Viñes, Armand Sanchez, Olga Francino
Peer Reviewers Alfonso Benítez-Páez; Rasmus H. Kirkegaard; Amanda Warr; Kon Chu; Lee J. Kerkhof
  • Funder
  • Agència de Gestió d’Ajuts Universitaris i de Recerca
LATEST VERSION PUBLISHED 01 Aug 2019
https://doi.org/10.12688/f1000research.11146.2
Research Article metrics
Revised
De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing
[version 2; peer review: 2 approved, 2 approved with reservations]
Michael Liem, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J.L.F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, Herman P. Spaink
Peer Reviewers Mile Šikić; Jean-Marc Aury and Benjamin Istace; Christina A. Cuomo; Hayan Lee
LATEST VERSION PUBLISHED 03 Aug 2018
https://doi.org/10.12688/f1000research.15507.1
Brief Report metrics
Real time portable genome sequencing for global food security
[version 1; peer review: 1 approved, 1 approved with reservations]
Laura Boykin, Ammar Ghalab, Bruno Rossitto De Marchi, Anders Savill, James M. Wainaina, Tonny Kinene, Stephen Lamb, Myriam Rodrigues, Monica Kehoe, Joseph Ndunguru, Fred Tairo, Peter Sseruwagi, Charles Kayuki, Deogratius Mark, Joel Erasto, Hilda Bachwenkizi, Titus Alicai, Geoffrey Okao-Okuja, Phillip Abridrabo, Emmanuel Ogwok, John Francis Osingada, Jimmy Akono, Elijah Ateka, Brenda Muga, Samuel Kiarie
Peer Reviewers Ruth E Timme; Alfonso Benítez-Páez
  • Funder
  • Crawford Fund
PUBLISHED 18 Jul 2018
https://doi.org/10.12688/f1000research.12414.2
Data Note metrics
Revised
First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
[version 2; peer review: 3 approved]
Tapan Kumar Mondal, Hukam Chand Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Kumar Singh
Peer Reviewers Sandip Das; Stephen P. Moose; Kashmir Singh
LATEST VERSION PUBLISHED 15 Dec 2017
https://doi.org/10.12688/f1000research.12012.2
Review metrics
Revised
The long reads ahead: de novo genome assembly using the MinION
[version 2; peer review: 2 approved]
Carlos de Lannoy, Dick de Ridder, Judith Risse
Peer Reviewers David A. Eccles; Christiaan V. Henkel and Michael Liem
LATEST VERSION PUBLISHED 12 Dec 2017
https://doi.org/10.12688/f1000research.11022.3
Software Tool Article metrics
Revised
Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
[version 3; peer review: 2 approved]
Scott Gigante
Peer Reviewers Matthew Loose; David A. Eccles
  • Funder
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 28 Sep 2017
https://doi.org/10.12688/f1000research.11547.2
Research Article metrics
Revised
Investigation of chimeric reads using the MinION
[version 2; peer review: 2 approved]
Ruby White, Christophe Pellefigues, Franca Ronchese, Olivier Lamiable, David Eccles
Peer Reviewers Keith E. Robison; Winston Timp
  • Funder
  • Health Research Council of New Zealand
LATEST VERSION PUBLISHED 16 Aug 2017
https://doi.org/10.12688/f1000research.10571.2
Research Article metrics
Revised
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
[version 2; peer review: 2 approved]
Jason L Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu-Jie Wang, David Buck, Kin Fai Au
Peer Reviewers Jingyi Jessica Li; Hagen Tilgner
  • Funders
  • University of Iowa
  • Multidisciplinary Lung Research Career Development Program
  • National Natural Science Foundation of China
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 19 Jun 2017
https://doi.org/10.12688/f1000research.11354.1
Research Article metrics
MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry
[version 1; peer review: 1 approved, 2 approved with reservations]
Miten Jain, John R. Tyson, Matthew Loose, Camilla L.C. Ip, David A. Eccles, Justin O'Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen, MinION Analysis and Reference Consortium
Peer Reviewers Wigard P. Kloosterman and Jose Espejo Valle Inclan; Martin C. Frith; C. Titus Brown and Lisa Cohen
  • Funders
  • E o R Börjessons Foundation
  • Koerner Foundation
  • Brain Canada
  • National Human Genome Research Institute
  • Canadian Institutes of Health Research
  • Rosetrees Trust
  • Antimicrobial Resistance Cross Council Initiative
  • Michael Smith Foundation for Health Research
  • Genome British Columbia
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
  • National Science Foundation
PUBLISHED 31 May 2017
https://doi.org/10.12688/f1000research.10545.1
Research Article metrics
Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis
[version 1; peer review: 1 approved, 2 approved with reservations]
Jodie Chandler, Mali Camberis, Tiffany Bouchery, Mark Blaxter, Graham Le Gros, David A Eccles
Peer Reviewers Matthias Bernt; Christian Rödelsperger; Jianbin Wang
  • Funders
  • Glenpark Foundation
  • Marjorie Barclay Trust
  • Health Research Council of New Zealand
PUBLISHED 19 Jan 2017
https://doi.org/10.12688/f1000research.7201.1
Research Article metrics
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
[version 1; peer review: 2 approved]
Camilla L.C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis and Reference Consortium
Peer Reviewers Michael Quail and Louise Aigrain; Nicholas J. Loman
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.7229.1
Editorial metrics NOT PEER REVIEWED
A disruptive sequencer meets disruptive publishing
[version 1; peer review: not peer reviewed]
Nick Loman, Sarah Goodwin, Hans J. Jansen, Matt Loose
PUBLISHED 15 Oct 2015
https://doi.org/10.12688/f1000research.6037.2
Research Note metrics
Revised
Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes
[version 2; peer review: 2 approved]
Ron Ammar, Tara A. Paton, Dax Torti, Adam Shlien, Gary D. Bader
Peer Reviewers Martin Kennedy; Thomas Hoenen
LATEST VERSION PUBLISHED 20 May 2015
21-36 of 36 ARTICLES
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