<p>BioXSD, BioJSON, BioYAML – towards unified formats for sequences, alignments, features, and annotations</p>

Matúš Kalaš; Sveinung Gundersen; László Kaján; Hervé Ménager; Jon Ison; Christophe Blanchet; Steve Pettifer; Rodrigo Lopez; Kristoffer Rapacki; Inge Jonassen

doi:10.7490/f1000research.1114457.1

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Kalaš M, Gundersen S, Kaján L et al. BioXSD, BioJSON, BioYAML – towards unified formats for sequences, alignments, features, and annotations [version 1; not peer reviewed]. F1000Research 2017, 6(ISCB Comm J):1179 (poster) (https://doi.org/10.7490/f1000research.1114457.1)

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BioXSD, BioJSON, BioYAML – towards unified formats for sequences, alignments, features, and annotations

Matúš Kalaš¹, Sveinung Gundersen, László Kaján, Hervé Ménager, Jon Ison, Christophe Blanchet, Steve Pettifer, Rodrigo Lopez, Kristoffer Rapacki, Inge Jonassen

Published 22 Jul 2017 (https://doi.org/10.7490/f1000research.1114457.1)

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Copyright © 2017 Kalaš M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Published 22 Jul 2017

BioXSD, BioJSON, BioYAML – towards unified formats for sequences, alignments, features, and annotations
[version 1; not peer reviewed]

Matúš Kalaš¹, Sveinung Gundersen, László Kaján, Hervé Ménager, Jon Ison, Christophe Blanchet, Steve Pettifer, Rodrigo Lopez, Kristoffer Rapacki, Inge Jonassen

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Presented at

18th Annual Bioinformatics Open Source Conference (BOSC 2017)

Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017

ELIXIR All Hands 2017

Abstract

Competing Interests

No competing interests were disclosed

Keywords

Data model, data format, integrative bioinformatics, biopolymer sequence, sequence alignment, sequence features, genomic features, XML, JSON, YAML, XML schema, ontologies

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