<p>Implementation of Nextflow for the automated processing of NovaSeq data sets</p>

Netsanet Gebremedhin; Eileen T.  Dimalanta; Theodore B.  Davis; Bradley W.  Langhorst

doi:10.7490/f1000research.1115845.1

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Gebremedhin N, Dimalanta ET, Davis TB and Langhorst BW. Implementation of Nextflow for the automated processing of NovaSeq data sets [version 1; not peer reviewed]. F1000Research 2018, 7(ISCB Comm J):1116 (poster) (https://doi.org/10.7490/f1000research.1115845.1)

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Implementation of Nextflow for the automated processing of NovaSeq data sets

Netsanet Gebremedhin¹, Eileen T. Dimalanta, Theodore B. Davis, Bradley W. Langhorst

Published 20 Jul 2018 (https://doi.org/10.7490/f1000research.1115845.1)

Author Affiliations

¹ New England Biolabs, USA

Copyright © 2018 Gebremedhin N et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 20 Jul 2018

Implementation of Nextflow for the automated processing of NovaSeq data sets
[version 1; not peer reviewed]

Netsanet Gebremedhin¹, Eileen T. Dimalanta, Theodore B. Davis, Bradley W. Langhorst

Author Affiliations

¹ New England Biolabs, USA

Presented at

Galaxy Community Conference and Bioinformatics Open Source Conference (GCCBOSC) 2018

Competing Interests

No competing interests were disclosed

Keywords

Nextflow, DNA, sequencing, pipeline, AWS, workflow, Illumina, NovaSeq, MiSeq, HiSeq, Kraken, E.coli, SGE, CfnCluster

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