<p>Gene set variation analysis in cBioPortal</p>

Pieter Lukasse; Fedde Schaeffer; Oleguer Plantalech Casals; Sander Tan; Dionne Zaal; Ersin Ciftci; Angelica Ochoa; Adam Abeshouse; Hongxin Zhang; Yichao Sun; Robert Sheridan; JianJiong Gao; Benjamin Gross; Sjoerd van Hagen; Kees van Bochove

doi:10.7490/f1000research.1115250.1

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Lukasse P, Schaeffer F, Plantalech Casals O et al. Gene set variation analysis in cBioPortal [version 1; not peer reviewed]. F1000Research 2018, 7(ISCB Comm J):150 (poster) (https://doi.org/10.7490/f1000research.1115250.1)

NOTE: it is important to ensure the information in square brackets after the title is included in this citation.

Gene set variation analysis in cBioPortal

Pieter Lukasse¹, Fedde Schaeffer, Oleguer Plantalech Casals, Sander Tan, Dionne Zaal, Ersin Ciftci, Angelica Ochoa, Adam Abeshouse, Hongxin Zhang, Yichao Sun, Robert Sheridan, JianJiong Gao, Benjamin Gross, Sjoerd van Hagen, Kees van Bochove

Published 05 Feb 2018 (https://doi.org/10.7490/f1000research.1115250.1)

Author Affiliations

¹ The Hyve, The Netherlands

Copyright © 2018 Lukasse P et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 05 Feb 2018

Gene set variation analysis in cBioPortal
[version 1; not peer reviewed]

Author Affiliations

¹ The Hyve, The Netherlands

Presented at

18th Annual Bioinformatics Open Source Conference (BOSC 2017)

Abstract

Competing Interests

The development of the presented feature was requested and sponsored by one of The Hyve's clients.

Keywords

GSVA, gene signatures, gene sets, msigdb, GSEA, gene set variation analysis, cBioPortal, open source

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