<p>EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats</p>

Matúš Kalaš; Laure Plantard; Moritz Alexander Kirschmann; Joakim Lindblad; Anatole Chessel; Nataša Sladoje-Matić; Leandro A. Scholz; Chong Zhang; Fabienne Rössler; Alexandre Dufour; John A. Bogovic; Martin Jones; Josh Moore; Alban Gaignard; Lassi Paavolainen; David Hörl; Ofra Golani; Participants in the NEUBIAS Taggathons; Perrine Paul-Gilloteaux; the EDAM dev team; Kota Miura; Julien Colombelli; and welcoming contributors

doi:10.7490/f1000research.1115257.1

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Kalaš M, Plantard L, Kirschmann MA et al. EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats [version 1; not peer reviewed]. F1000Research 2018, 7(ELIXIR):180 (poster) (https://doi.org/10.7490/f1000research.1115257.1)

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EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats

Matúš Kalaš¹, Laure Plantard, Moritz Alexander Kirschmann, Joakim Lindblad, Anatole Chessel, Nataša Sladoje-Matić, Leandro A. Scholz, Chong Zhang, Fabienne Rössler, Alexandre Dufour, John A. Bogovic, Martin Jones, Josh Moore, Alban Gaignard, Lassi Paavolainen, David Hörl, Ofra Golani, Participants in the NEUBIAS Taggathons, Perrine Paul-Gilloteaux, the EDAM dev team, Kota Miura, Julien Colombelli, and welcoming contributors

Published 12 Feb 2018 (https://doi.org/10.7490/f1000research.1115257.1)

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Copyright © 2018 Kalaš M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 12 Feb 2018

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats
[version 1; not peer reviewed]

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Presented at

2nd NEUBIAS Bioimage Analysis Community Conference 2018

Abstract

Competing Interests

No competing interests were disclosed

Keywords

Bioimaging, bioimage informatics, bioimage analysis, ontology, community effort, interoperability, reliability, transparency, reproducible science, EDAM, NEUBIAS, ELIXIR

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