<p>EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update)</p>

Matúš Kalaš; Laure Plantard; Nataša Sladoje; Joakim Lindblad; Moritz Alexander Kirschmann; Martin Jones; Anatole Chessel; Leandro Aluisio Scholz; Fabienne Rössler; Alexandre Dufour; John Bogovic; Chong Zhang; Dominic Waithe; Paula Sampaio; Lassi Paavolainen; David Hörl; Sebastian Munck; Ofra Golani; Josh Moore; Alban Gaignard; Florian Levet; participants in the NEUBIAS Taggathons; Perrine Paul-Gilloteaux; Jon Ison; the EDAM dev team; Kota Miura; Julien Colombelli; and welcoming new contributors

doi:10.7490/f1000research.1116432.1

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Kalaš M, Plantard L, Sladoje N et al. EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update) [version 1; not peer reviewed]. F1000Research 2019, 8:158 (poster) (https://doi.org/10.7490/f1000research.1116432.1)

NOTE: it is important to ensure the information in square brackets after the title is included in this citation.

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update)

Matúš Kalaš¹, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Alexander Kirschmann, Martin Jones, Anatole Chessel, Leandro Aluisio Scholz, Fabienne Rössler, Alexandre Dufour, John Bogovic, Chong Zhang, Dominic Waithe, Paula Sampaio, Lassi Paavolainen, David Hörl, Sebastian Munck, Ofra Golani, Josh Moore, Alban Gaignard, Florian Levet, participants in the NEUBIAS Taggathons, Perrine Paul-Gilloteaux, Jon Ison, the EDAM dev team, Kota Miura, Julien Colombelli, and welcoming new contributors

Published 06 Feb 2019 (https://doi.org/10.7490/f1000research.1116432.1)

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Copyright © 2019 Kalaš M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 06 Feb 2019

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update)
[version 1; not peer reviewed]

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Presented at

3rd NEUBIAS Bioimage Analysis Community Conference 2019

Abstract

Competing Interests

No competing interests were disclosed

Keywords

Bioimaging, bioimage informatics, bioimage analysis, ontology, community effort, interoperability, reliability, transparency, reproducible science, EDAM, NEUBIAS, ELIXIR

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