<p>EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)</p>

Matúš Kalaš; Laure Plantard; Joakim Lindblad; Martin Jones; Nataša Sladoje; Moritz A. Kirschmann; Anatole Chessel; Leandro Scholz; Fabienne Rössler; Laura Nicolás Sáenz; Estibaliz Gómez de Mariscal; John Bogovic; Alexandre Dufour; Xavier Heiligenstein; Dominic Waithe; Marie-Charlotte Domart; Matthia Karreman; Raf Van de Plas; Robert Haase; David Hörl; Lassi Paavolainen; Ivana Vrhovac Madunić; Dean Karaica; Arrate Muñoz-Barrutia; Paula Sampaio; Daniel Sage; Sebastian Munck; Ofra Golani; Josh Moore; Florian Levet; Jon Ison; Alban Gaignard; Hervé Ménager; Chong Zhang; Kota Miura; Julien Colombelli; Perrine Paul-Gilloteaux; We are welcoming new contributors!

doi:10.7490/f1000research.1117826.1

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Kalaš M, Plantard L, Lindblad J et al. EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020) [version 1; not peer reviewed]. F1000Research 2020, 9(ELIXIR):162 (poster) (https://doi.org/10.7490/f1000research.1117826.1)

NOTE: it is important to ensure the information in square brackets after the title is included in this citation.

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)

Matúš Kalaš¹, Laure Plantard, Joakim Lindblad, Martin Jones, Nataša Sladoje, Moritz A. Kirschmann, Anatole Chessel, Leandro Scholz, Fabienne Rössler, Laura Nicolás Sáenz, Estibaliz Gómez de Mariscal, John Bogovic, Alexandre Dufour, Xavier Heiligenstein, Dominic Waithe, Marie-Charlotte Domart, Matthia Karreman, Raf Van de Plas, Robert Haase, David Hörl, Lassi Paavolainen, Ivana Vrhovac Madunić, Dean Karaica, Arrate Muñoz-Barrutia, Paula Sampaio, Daniel Sage, Sebastian Munck, Ofra Golani, Josh Moore, Florian Levet, Jon Ison, Alban Gaignard, Hervé Ménager, Chong Zhang, Kota Miura, Julien Colombelli, Perrine Paul-Gilloteaux, We are welcoming new contributors!

Published 04 Mar 2020 (https://doi.org/10.7490/f1000research.1117826.1)

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Copyright © 2020 Kalaš M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 04 Mar 2020

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)
[version 1; not peer reviewed]

Author Affiliations

¹ Computational Biology Unit, Department of Informatics, University of Bergen, Norway

Presented at

4th NEUBIAS Bioimage Analysis Community Conference 2020

Lorentz Center workshop on Automated Workflow Composition in the Life Sciences

ELIXIR All Hands 2020

Abstract

Competing Interests

No competing interests were disclosed

Keywords

Bioimaging, Bioimage informatics, Bioimage analysis, Machine learning, Domain ontology, Community effort, Tools, Workflows, Training materials, Interoperability, Reliability, Transparency, Integration, Open data, Open science, Open source, Reproducible science, EDAM, NEUBIAS, COMULIS, ELIXIR

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