<p><i>scdrake</i>: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis</p>

Michal Kolář; Jiří Novotný; Jan Kubovčiak; Lucie Pfeiferová

doi:10.7490/f1000research.1119875.1

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Kolář M, Novotný J, Kubovčiak J and Pfeiferová L. scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis [version 1; not peer reviewed]. F1000Research 2024, 13(ELIXIR):1098 (slides) (https://doi.org/10.7490/f1000research.1119875.1)

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scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis

Michal Kolář¹, Jiří Novotný, Jan Kubovčiak, Lucie Pfeiferová

Published 27 Sep 2024 (https://doi.org/10.7490/f1000research.1119875.1)

Author Affiliations

¹ Laboratory of Genomics and Bioinformatics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic

Copyright © 2024 Kolář M et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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CITE

Published 27 Sep 2024

scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis
[version 1; not peer reviewed]

Michal Kolář¹, Jiří Novotný, Jan Kubovčiak, Lucie Pfeiferová

Author Affiliations

¹ Laboratory of Genomics and Bioinformatics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic

Presented at

European Conference on Computational Biology (ECCB) 2024

Abstract

Competing Interests

No competing interests were disclosed

Keywords

single-cell RNA-seq, spatially-resolved transcriptomics, secondary analysis pipeline, scdrake, ELIXIR

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scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis

scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis [version 1; not peer reviewed]

Terms relating to user comments

scdrake: a reproducible and scalable pipeline for scRNA-seq and SRT data analysis
[version 1; not peer reviewed]