<p>Reference-free structural variant detection in microbiomes via long-read co-assembly graphs with rhea</p>

Kristen Curry; Feiqiao Brian Yu; Summer E Vance; Santiago Segarra; Devaki Bhaya; Rayan Chikhi; Eduardo P C Rocha; Todd J Treangen

doi:10.7490/f1000research.1119947.1

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Curry K, Yu FB, Vance SE et al. Reference-free structural variant detection in microbiomes via long-read co-assembly graphs with rhea [version 1; not peer reviewed]. F1000Research 2024, 13:1396 (slides) (https://doi.org/10.7490/f1000research.1119947.1)

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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs with rhea

Kristen Curry¹, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen

Published 20 Nov 2024 (https://doi.org/10.7490/f1000research.1119947.1)

Author Affiliations

¹ Computational Biology, Institut Pasteur, Paris, Île-de-France, France

Copyright © 2024 Curry K et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Published 20 Nov 2024

Reference-free structural variant detection in microbiomes via long-read co-assembly graphs with rhea
[version 1; not peer reviewed]

Kristen Curry¹, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen

Author Affiliations

¹ Computational Biology, Institut Pasteur, Paris, Île-de-France, France

Presented at

Intelligent Systems for Molecular Biology Conference (ISMB), 2025

Abstract

Competing Interests

No competing interests were disclosed

Keywords

microbiome, metagenomics, structural variants

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