<p>Breaking the silo: composable bioinformatics through cross-disciplinary open standards</p>

Nezar Abdennur; Trevor Manz; Jack Huey; Garrett Ng; Vedat Yilmaz; Nils Gehlenborg; Open2C community

doi:10.7490/f1000research.1120076.1

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Abdennur N, Manz T, Huey J et al. Breaking the silo: composable bioinformatics through cross-disciplinary open standards [version 1; not peer reviewed]. F1000Research 2025, 14:26 (slides) (https://doi.org/10.7490/f1000research.1120076.1)

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Breaking the silo: composable bioinformatics through cross-disciplinary open standards

Nezar Abdennur¹, Trevor Manz, Jack Huey, Garrett Ng, Vedat Yilmaz, Nils Gehlenborg, Open2C community

Published 06 Jan 2025 (https://doi.org/10.7490/f1000research.1120076.1)

Author Affiliations

¹ Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA

Copyright © 2025 Abdennur N et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Published 06 Jan 2025

Breaking the silo: composable bioinformatics through cross-disciplinary open standards
[version 1; not peer reviewed]

Nezar Abdennur¹, Trevor Manz, Jack Huey, Garrett Ng, Vedat Yilmaz, Nils Gehlenborg, Open2C community

Author Affiliations

¹ Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA

Presented at

Intelligent Systems for Molecular Biology Conference (ISMB), 2025

Bioinformatics Open Source Conference (BOSC), 2024

Abstract

Competing Interests

No competing interests were disclosed

Keywords

genomics, bioinformatics, ngs, data science, visualization, machine learning, python, rust, javascript, ecmascript, pandas, dataframe, apache arrow, esm, jupyter, widget, oxbow, bioframe, anywidget

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