<p>GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regulatory networks</p>

Kam D Dahlquist; Ben G Fitzpatrick; John David N Dionisio; Nicole A Anguiano; Juan S Carrillo; Trixie Anne M Roque; Anindita Varshneya; Mihir Samdarshi; Chukwuemeka E Azinge

doi:10.7490/f1000research.1112534.1

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Dahlquist KD, Fitzpatrick BG, Dionisio JDN et al. GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regulatory networks [version 1; not peer reviewed]. F1000Research 2016, 5(ISCB Comm J):1637 (slides) (https://doi.org/10.7490/f1000research.1112534.1)

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GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regulatory networks

Kam D Dahlquist¹, Ben G Fitzpatrick, John David N Dionisio, Nicole A Anguiano, Juan S Carrillo, Trixie Anne M Roque, Anindita Varshneya, Mihir Samdarshi, Chukwuemeka E Azinge

Published 09 Jul 2016 (https://doi.org/10.7490/f1000research.1112534.1)

Author Affiliations

¹ Loyola Marymount University, USA

Copyright © 2016 Dahlquist KD et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Published 09 Jul 2016

GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regulatory networks
[version 1; not peer reviewed]

Kam D Dahlquist¹, Ben G Fitzpatrick, John David N Dionisio, Nicole A Anguiano, Juan S Carrillo, Trixie Anne M Roque, Anindita Varshneya, Mihir Samdarshi, Chukwuemeka E Azinge

Author Affiliations

¹ Loyola Marymount University, USA

Presented at

Bioinformatics Open Source Conference (BOSC 2016)

Abstract

Competing Interests

No competing interests were disclosed

Keywords

gene regulatory networks, ordinary differential equations, penalized least squares, network visualization, automated graph layout, open source, web application, open pedagogy

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