Keywords
COVID-19, SARS-CoV-2, Seroprevalence, Antibody levels, risk factors, Ecuador
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Leon-Rojas JE, Veloz T, Teran J et al. The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.12688/f1000research.126577.2)
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Study Protocol
Revised
The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol
[version 2; peer review: 1 approved, 2 approved with reservations]
PUBLISHED 23 Feb 2024
OPEN PEER REVIEW
REVIEWER STATUS
This article is included in the Pathogens gateway.
This article is included in the Emerging Diseases and Outbreaks gateway.
Abstract
Corresponding author:
Jose E. Leon-Rojas
Competing interests:
No competing interests were disclosed.
Grant information:
CEDIA- CEPRA XVI-2022-17 ANTICUERPOS IGG IGA Grant given to NR, JLR, PJ and RR. UIDE-MAT-INP-MEM-21-0289 Grant given to NR, PC, MM, JLR. UIDE-DGIP-MAT-MEM-21-0288 Grant given to JLR, NR, PC, MM. UIDE-DGIP-MAT-MEM-20-0168 Grant given to NR, PC, MM.
The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Copyright:
© 2024 Leon-Rojas JE et al.
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
How to cite: Leon-Rojas JE, Veloz T, Teran J et al. The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.12688/f1000research.126577.2)
First published: 28 Nov 2022, 11:1392 (https://doi.org/10.12688/f1000research.126577.1)
Latest published: 23 Feb 2024, 11:1392 (https://doi.org/10.12688/f1000research.126577.2)
The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Revised Amendments from Version 1
The revised version contains clearer information regarding the laboratory tests performed for SARS-CoV-2 as well as more specific text on the objectives, introduction and limitations of the study. All of these changes were done in response to the reviewers suggestions.
See the authors' detailed response to the review by Chun-Yang Lin
See the authors' detailed response to the review by Ria Lassaunière
Introduction
The pandemic caused by the new coronavirus, SARS-CoV-2, the etiological agent of COVID-19, has caused 612 million confirmed cases and approximately 6.5 million deaths worldwide since December 2019 when the virus first emerged (Johns Hopkins Coronavirus Resource Center). In Ecuador, the first confirmed case of COVID-19 was reported on 29th February 2020 and as of 19th September 2022, one million confirmed cases have been reported with 35,885 deaths. The highest burden of infection is among those aged 20 to 55 years age group, while death rates are greatest among those aged over 65 years (Daily Report of the Ecuadorian Ministry of Public Health).
The presence of specific IgG antibodies to SARS-COV-2 indicates past exposure to SARS-COV-2 and vaccination, given that most serological assays using the spike protein cannot distinguish between these two forms of exposure. Additionally, since the virus invades the body through the mucosal surfaces, the role of mucosal immune responses measured by specific IgA, has been neglected compared to the measurement of systemic IgG responses.1 Timely seroprevalence studies in the population are useful in monitoring rates of exposure to natural infections (prior to vaccination programs), and vaccine coverage and immunogenicity following the implementation of vaccination programs.2 Measuring the waning immunity across different groups in the population will add to our understanding of the epidemiology of the infection and will help identify population groups with increased infection susceptibility.1–3
Numerous seroprevalence studies have been conducted in the Latin American region, both population-based studies and studies focusing on specific populations (healthcare (HCW) or first-line workers, prison workers, indigenous populations, elderly populations, etc).4–15 The reported seroprevalence is highly heterogenous between studies (10,4% – 68,1 %), varying by study population, characteristics of the COVID-19 epidemic at the time of sampling, and differences in sociodemographic factors.4–15 Factors associated with increasing risk of seropositivity include ethnicity (indigenous or Afro-descent), presence of COVID-19 symptoms, past history of COVID-19 or close contacts, lower educational level, and working night shifts (for HCW) or in a prison.4–15
Among these studies, a cross-sectional study in 2020 of 3,124 children aged 5 to 17 years in 10 Colombian cities reported highly variable seroprevalence ranging from 25.0% in Medellin to 63.9% in Guapi, the latter a coastal city with a high proportion of Afro-Colombians with the poorest living conditions.10 Further, a cross-sectional study in 2021 from Brazil of six indigenous groups in the Amazon region showed a high average seroprevalence for anti-SARS-CoV-2 IgG (68.1%).11 Finally, a systematic review analysing 15 seroprevalence studies from Latin America and the Caribbean reported a highly variable seroprevalence between indigenous populations ranging 4.2% to 81.7%.13
There are nine published studies estimating seroprevalence rates for IgM/IgG antibodies to SARS-CoV-2 from different regions of Ecuador (Table 1) covering the period from April 2020 to April 2021 with seroprevalence estimates ranging 7.7% to 64%.16–24 Six of these studies are derived from samples nested within the same observational adult cohort from Atahualpa, a coastal community in Santa Elena Province and it is uncertain the degree of overlap between samples.16–21 Two of four longitudinal studies using the Atahualpa cohort with follow-up of 116 and 1218 months, estimated seroincidence (i.e., incidence rate ratio for seroconversion) of 7.416 to 9.918 per 100 person years, respectively.
Table 1. Summary of seroprevalence estimates for IgM/IgG antibodies to SARS-CoV-2 from Ecuador, ordered by sampling date.
| Author (Year) | Location | Design | Date of Sampling | Sample size | Age (mean yrs) | Test | Seroprevalence |
|---|---|---|---|---|---|---|---|
| Del Brutto (2021)21 | Atahualpa, Santa Elena Province, coastal rural | Longitudinal | April 2020 - May 2021 | 277 | 70.6 | IgM/IgG Rapid Test | 63.2% (95% CI 57.4-68.6) |
| Del Brutto (2020)17 | Atahualpa, Santa Elena Province, coastal rural | Cross-Sectional | May 2020 | 673 | 59.2 | IgM/IgG Rapid Test | 45% |
| Del Brutto (2020)20 | Atahualpa, Santa Elena Province, coastal rural | Cross-Sectional | May 2020 | 319 | 70.5 | IgM/IgG Rapid Test | 44% |
| Del Brutto (2020)16 | Atahualpa, Santa Elena Province, coastal rural | Longitudinal | May-June 2020 | 362 | 59.9 | IgM/IgG Rapid Test | 7.7% IRR 7.4/100 person months (95% CI 4.7-10.2) |
| Del Brutto (2021)19 | Atahualpa, Santa Elena Province, coastal rural | Longitudinal | May 2020 – April2021 | 519 | 61.8 | IgM/IgG Rapid Test | 63% |
| Del Brutto (2021)18 | Atahualpa, Santa Elena Province, coastal rural | Longitudinal | May 2020 - April 2021 | 673 | 59.2 | IgM/IgG Rapid Test | 64% IRR 9.9/100 person months (95% CI 8.9-10.8) |
| Acurio-Páez (2021)22 | Cuenca, Azuay Province, Andes, rural/urban | Cross-Sectional | Aug -Nov 2020 | 2,457 | 39.0 | IgM/IgG Rapid Test | 13.2% (95% CI 12.0-14.6%) |
| Zambrano (2021)23 | Babahoyo, Guayas Province, coastal urban | Cross-Sectional | Sept 2020 - Jan 2021 | 100 pregnant women | 24.8 | IgM/IgG ELISA | 32% |
| Vallejo-Janeta (2022)24 | 5 coastal districts in Esmeraldas, Province | Cross-Sectional | Oct 2020 | 1250 | 45.3 | IgM/IgG Rapid Test | 11.7% (95% CI: 10.0-13.6); |
In most regions, vaccination has been a major component of national mitigation strategies for COVID-19 resulting in marked reductions in hospitalizations and deaths worldwide.25 In Ecuador, vaccination was initiated on 21st January 2021 as part of the national vaccination strategy “Plan Vacunarse”, consisting of four phases: Phase 0, a pilot phase, started in January 2021 and targeted first line workers and very high-risk individuals; Phase 1 started in March 2021 and included individuals with risk of severe disease such as the elderly; Phase 2 started in June 2021 and included the adult populations living in provinces with a high incidence of COVID-19; and Phase 3 started in September 2021 including adult populations in the other provinces.26 Booster doses (third and fourth doses) started in October 2021 and April 2022, respectively (Vaccination Report Ministry of Public Health). As of May 2022, 83% of the population had received a complete 2-dose vaccination schedule (with one of CoronaVac, Pfizer-BioNTech, AstraZeneca, and Cansino), and 35.6 % has received at least one booster shot (Vaccination Report Ministry of Public Health). Figure 1 shows confirmed cumulative SARS-COV-2 infections and monthly incidence per 1000 population over the period February 2020 through May 2022.
Figure 1. Confirmed cumulative SARS-COV-2 infections and monthly incidence per 1000 population over the period February 2020 to May 2022.
Legend: Arrows indicate the initiation of different phases in the national vaccination programme. Data from: https://www.salud.gob.ec/coronavirus-covid19-ecuador/.
Here, we present the protocol for a longitudinal study of seroprevalence and changes in systemic (plasma IgG) and mucosal (salivary IgA) antibodies being done in three adult cohorts of different infection risk justified by presumed different infection patterns, in two Andean cities in Ecuador, a low-middle income country. In addition, we will explore the effects of natural infections and vaccinations, as well as other relevant determinants (e.g. age, sex, and occupation), on seroprevalence and time trends since infection on antibody levels.
Protocol
General objective
To estimate changes in and determinants of seroprevalence and levels of anti-SARS-CoV-2 antibodies over 12 months of follow-up in adults aged 18 years and older, with varying levels of exposure (defined a priori as low, medium, and high based on presumed occupational risk) and associated factors, in two Ecuadorian Andean cities.
Specific objectives
1. Identify risk factors (including cohort membership) associated with baseline seroprevalence and IgG antibody levels in the three cohorts (pre-vaccination)
2. Evaluate changes in seroprevalence and IgG antibody levels over at least 12 months of follow-up.
3. Identify effects of determinants on longitudinal changes in specific IgG antibody levels over at least 12 months of follow-up. Potential determinants will include cohort membership, sociodemographic factors, vaccination (including type of vaccine administered), number of vaccine doses, natural (past exposures) infections, and their timing.
4. Estimate the pattern of decline in anti-SARS-CoV-2 IgG antibodies among seropositives and impact of vaccinations and other relevant determinants on this decline.
5. To estimate the development and longevity of the mucosal immune response through the measurement of levels of anti-SARS-CoV-2 IgA in saliva and the impact of relevant determinants on changes in antibody levels.
Methods
Study design
Prospective longitudinal cohort (Figure 2).
Figure 2. Recruitment and follow-up of 3 cohorts by calendar time.
Legend: Syringes show introduction of COVID-19 vaccine doses, red drops show sample collections, and dotted red drops show timings of future sample collections.
Definition of the study population and eligibility criteria
Three cohorts from two Ecuadorian Andean cities, based on assumed risk of occupational exposure to SARS-CoV-2, are being recruited in two Andean cities, Quito, and Ambato. These three cohorts are presumed to differ in the probability of exposure to SARS-CoV-2. Eligibility criteria for entry into the 3 cohorts are provided in Table 2.
1. High Risk (HR): Defined as being of high exposure risk through an occupational setting of health care workers and support personnel working in the emergency service, ICUs and hospitalization areas at a major public hospital (Hospital Eugenio Espejo) in Quito, at altitude of 2,800 m in northern Andean region, with 2.9 million inhabitants.
2. Medium Risk (MR): Population whose occupation puts them at a considerable risk of contracting SARS-CoV-2 (merchants, farmers or those that do not self-isolate due to the nature of their work). The population selected was Huachi Grande parish in the city of Ambato, at altitude of 2,600 m, in central Andean region, with 500,000 inhabitants.
3. Low Risk (LR): Population with a presumed low risk of SARS-CoV-2 infection due to the characteristics of their occupation (staff and students at a private university, with the means to self-isolate) and living within the metropolitan district of Quito. This cohort is composed of teachers, administrative staff, and the student community of Universidad Internacional del Ecuador (UIDE), Quito.
Table 2. Eligibility criteria for three adult cohorts.
Data and sample collection
Questionnaires
Data are being collected digitally by trained interviewers using a standardised tool developed specifically for the COVID-19 pandemic (ISARIC-WHO Global COVID-19 Clinical Platform “Rapid core case report form (CRF)” questionnaire, subsections 1b, 1f, and 3a) at baseline (month 0) and every three months either via telephone or face-to-face interviews. This tool collects data on socio-demographics, history of signs and symptoms related to COVID-19, and previous diagnoses and treatments. The main determinants that will be considered during analysis will be age, sex, ethnicity, history of COVID-19, history of PCR testing, symptoms, time since diagnosis, time since last vaccination, type of vaccine, and number of doses.
Clinical samples
Saliva and blood are being collected at baseline and 3-monthly intervals (0, 3, 6, and 12 months). Blood samples are being collected into 5 ml Vacutainer tubes with EDTA as anticoagulant (Vacutainer, BD Biosciences), and plasma separated by centrifugation and stored in 0.5 mL aliquots at -20 °C. Saliva sample (0.5-1 mL) are being collected directly into 2 ml microtubes after asking the participant to think of food, centrifuged to remove residual food debris, and stored in 0.5 mL aliquots at -20 °C.
Measurement of anti-SARS-CoV-2 IgG and IgA antibodies
Presence and levels of IgG antibodies directed against the Receptor Binding Domain (RBD) of the SARS-CoV-2 spike protein will be measured in stored plasma using an ELISA essay adapted from Guevara et al., 2021.27 Specific IgA antibodies against SARS-CoV-2 RBD will be measured in saliva samples using an ELISA-based assay modified from Costantini et al., 2022.28 Specific IgG and IgA quantitation will use standard curves of serum pools of positive samples calibrated against an WHO international standard (National Institute for Biological Standards and Control, Potters Bar, United Kingdom). Flat bottom 96-well microtiter plates (Nunc Maxisorp™, Thermo Fisher Scientific, USA) were coated overnight at room temperature with recombinant RBD (50 ng/well) in phosphate-buffered saline solution (PBS pH 7.2). Wells content was discarded and washed with PBS containing 0.1% Tween-20 (PBST) and wells blocked with 100 μL of blocking buffer (PBS-0.1% Tween 20 and 4% bovine serum albumin) to each well and incubated for 30 minutes at 37 °C. After blocking, the plates were washed and 100 μL of serum samples diluted with 5% non-fat milk in PBST was added to each well for reaction at 37 °C for 1 hour. Dilutions from 1:200 to 1:1000 were used to capture a broad range of antibody levels and achieve optimal measurement of antibody levels. After washing, 100 μL of horseradish peroxidase (HRP)-labelled goat anti-human IgG (Invitrogen, USA) antibody diluted 8000-fold with 5% non-fat milk in PBST was added to each well and incubated at 37 °C for 30 minutes. Post-wash, 100 μL of SIGMAFAST o-phenylenediamine dihydrochloride substrate solution (Sigma-Aldrich, USA) was added to each well for reaction at room temperature (RT) for 10 minutes in the dark. The reaction was stopped by the addition of 100 μL of 3M HCl. Optical density (OD) at 490 nm was measured.
To assay saliva samples, the same procedure as mentioned above was followed, with the exception that the saliva samples were centrifuged at 14,000 rpm for 8 minutes at 4 °C and supernatants were diluted 1:1 to 1:4. As secondary antibody, 50 μl of Goat Anti-Human IgA alpha chain (HRP) (Abcam, United Kingdom) antibodies were added at dilution of 1:2000 with 5% non-fat milk in PBST and incubated for 30 minutes at 37 °C. The development procedure was the same as for IgG.
Follow up
The initial sample was collected before vaccination in all cohorts; after baseline evaluation subsequent sampling was done as follows:
a. at 3 months after baseline if the participant had not been vaccinated.
b. at 30-45 days after receiving the two-dose vaccine schedule or boosters’ doses.
Follow-up was done on site (university, hospital, or parish administrative building) or through home visits at the sampling follow-up times (0, 3, 6, and 12 months depending on vaccine dose timings). Subjects were contacted also by phone at monthly intervals to collect data on new infections and vaccinations and to provide antibody results, as well as address any doubts or concerns about the study. All evaluations were done by a dedicated and trained study team.
Statistical considerations
At the time of study planning, there were no reliable longitudinal data to estimate minimum sample size needed to understand the dynamics of waning immunity in different risk populations. Given the rapid dynamics of unfolding events, convenience sampling will be done in each of the three occupational risk cohorts with the aim of recruiting a total of 1,000 adults. Our data are exploratory in nature and the estimates will serve as input for planning future prospective comparative studies.
Cross sectional variables will be summarized according to their nature, i.e. means, standard deviations, medians, inter-quartiles, ranges and frequencies and proportions for categorical variables. Data summaries will be done for each risk group to understand the characteristics of each risk group.
Presence and levels of IgG/IgA antibodies will define binary and continuous longitudinal outcomes, respectively. Generalized estimation equations (GEEs) will be used to fit population averaged models under the most general assumptions of unstructured variance covariance matrix. It is likely that the distributions IgG/IgA antibody levels will be highly skewed and logarithmic transformation will be required to satisfy such models’ assumptions. The continuous longitudinal outcome will quantify patterns in trends in the monthly average waning immunity across groups and their characteristics – trends are expected to be nonlinear. The binary outcomes will evaluate the associations between presence/absence of antibodies and epidemiologically plausible independent variables through odds ratios. Mixed models will also be done and the estimates will be compared with those obtained by the GEEs fit. All analyses will be adjusted for levels of the infection in the general populations by calendar time, and by associated periods of interventions. Time-varying covariates are expected to be defined based on these later interventions. P-values less than 0.05 will indicate statistically significant (potentially adjusted) associations and 95% confidence intervals will assess the uncertainty of the estimates.
Multivariable models will be built for each risk group accounting for all potential explanatory variables and their interactions - particularly with time at follow-up. The most parsimonious model will be constructed based on the largest complete observations dataset using likelihood criteria such as quasi-likelihood value under the independence model criterion (QIC) for GEEs or likelihood-ratio type criteria for mixed models. GEE estimation is based on completely at random missing observations assumption whilst mixed models are based on missing at random assumption. The attrition patterns will be investigated, and sensitivity analyses to the estimates obtained on complete datasets using the two estimation techniques will be performed and discussed.
Ethics and dissemination
The study protocol was approved by the Ecuadorian Ministry of Public Health Ethics Committee for COVID-19 Research (approval ID 020-2020- MSP-CGDES-2020-0172-O). The study results will be disseminated through presentations at conferences and to key stakeholder groups including policy makers, and through postgraduate theses and peer-review publications. All participants were required to accept participation by reading and signing an informed consent at the time of the first sampling.
Discussion
We are following up three adult longitudinal cohorts with presumed distinct exposure risks to SARS-CoV-2 based on occupation, in two Andean cities of Ecuador, to study determinants of seroprevalence and changes in systemic and mucosal antibody levels against SARS-CoV-2.
Seroprevalence testing can be done using the detection of specific IgG and or IgM antibodies. IgM antibodies are detectable first from day 5-7 days post-infection with a peak at day 28 while IgG become detectable after 5-10 days and peak at 49 days.1,29,30 In contrast, specific IgG antibodies following vaccination against SARS-CoV-2 are detectable from about a week following the first dose and peak at approximately 30 days after the second dose, remaining detectable for 3-6 months.31,32 For example, a cross-sectional study in 56,261 Chilean individuals reported an IgG seroprevalence of 28.1% three weeks after the first dose and 77.4% four weeks after the second dose of the CoronaVac vaccine; and a prevalence of 79.4% three weeks after the first dose and 96.5% four weeks after the second dose of the BNT162b2 Pfizer vaccine.7 In healthcare workers (HCW) receiving the BNT162b2 Pfizer vaccine, a study showed that median serum levels of antibodies reached a peak 1 month after the second dose and were 37% and 57% lower at 3 and 6 months, respectively.33 Finally, a study, also in HCW, showed that antibodies remained high at three months after the third vaccination dose and that antibodies were quantitatively higher in those HCWs that had a history of COVID-19 infection and a third vaccine dose.34
Our study aims to measure changes in antibody levels in the context of continuous (documented) exposures to natural infection and widespread vaccination with blood collections done as follows: 1) before the first vaccine dose; 2) at 30-60 days after the second dose; 3) 30-60 days after the third dose (when possible); and 4) 30-60 days after the fourth dose (where possible). These sampling times will allow us to measure effects of COVID-19 vaccination and booster doses with the three vaccines licensed for use in Ecuador (CoronaVac, Pfizer and AstraZeneca) on seroprevalence and antibody levels.
Other than vaccination or natural infection, additional factors have been reported to have significant effects on anti-SARS-Cov-2 antibodies. Front-line professionals such as doctors, nurses, hospital workers, police officers, among others, are more likely to acquire COVID-19 and therefore, would be expected to have higher seroprevalence rates than the general population.35–37 A study involving 569 Canadian HCWs reported an IgG seropositivity duration of 415 days and 213 days for symptomatic and asymptomatic individuals, respectively; with obesity, age (over 55 years), and non-Caucasian ethnicity associated with longer seropositivity.38 Finally, ethnicity is also a factor affecting seroprevalence with indigenous populations having the highest reported seroprevalence (ranging from 4.2 – 81.65%) and populations of African descent having 68% prevalence.35–37 These differences might be explained by greater levels of migration (particularly in seeking work) and more menial work opportunities that don’t allow self-isolation, and a consequently greater risk of exposure to SARS-CoV-2. This is exemplified by a study done in Colombia where the global prevalence in the populations studied was 32.25%, while in Pacific coastal city of Guapi (where a high proportion of the population is of African descent with high rates of temporary migration), the IgG seroprevalence was 68%.10
There are relatively few longitudinal data on mucosal antibody (IgA) response to SARS-CoV-2 from settings in low and middle-income countries. A systematic review of 38 original studies measuring specific IgA reported a seroprevalence of 86.5% among PCR positive SARS-CoV-2 patients and that the production of specific IgA was detectable during the first 10 days following infection, and remained detectable for prolonged periods (e.g. 75 days after symptom onset).39 Finally, a study that analysed 100 communities in Wuhan, China showed that the presence of specific IgA antibodies decreased rapidly over time, as for IgM, especially those infected but who were asymptomatic.40
Our study will evaluate differences in seroprevalence between cohorts with different occupational exposures (HCWs, highly mobile workers, and university staff and students) believed to have differing a priori risks of exposure to SARS-CoV-2. To our knowledge, there are no published longitudinal studies analysing cohorts with differing occupational risks for changes in systemic and mucosal antibodies to SARS-CoV-2. We hope to identify relevant factors related to changes in antibody levels including the effect of vaccination (including vaccine type and dose), occupation, and natural infections (and re-infections) with SARs-CoV-2.
Study limitations
The study is subject to several potential limitations. Significant losses to follow-up can lead to selection bias and these are being minimized by close coordination of project activities with community leaders and institutional authorities, and regular contacts with study participants (at 3-monthly intervals). Recall bias is being minimized through these regular follow-ups to collect information on potential infections with SARS-CoV-2 and vaccination dates. Misclassification of data collection is being minimized by using a widely used standardized instrument (ISARIC WHO), and of antibody measurements by the use of validated detection assays blind to potential exposures. Because of high expected seroprevalence through vaccination, we are measuring antibody levels, thus maximizing the potential power of the study. Misclassification of exposure to SARS-CoV-2 is unavoidable and may be systematic because of limited access to PCR-based assays – underreporting of confirmed infections will likely be least in the hospital-based cohort. Similarly, the use of different vaccines of differing immunogenicity likely will influence maximal antibody levels: vaccine type and dose will be considered as a potential confounder or determinant in different longitudinal analyses. The receipt of multiple vaccine doses at regular intervals (up to 3 doses during 12 months or so of follow-up) may limit the ability to measure rates of decline in antibody levels. Further, the measurement of IgG specific for spike protein and not for other SARS-CoV-2 antigens will limit our ability to distinguish vaccine-induced antibodies from those induced by natural infection.
Conclusions
We are undertaking a prospective longitudinal cohort study to evaluate the effects of SARS-CoV-2 and vaccine exposures on longitudinal changes in systemic (plasma IgG) and mucosal (salivary IgA) antibodies to SARS-CoV-2. To our knowledge, this is one of very few such longitudinal studies being done in a low-middle income country setting and will contribute to our understanding of the impact of natural infectious exposures versus vaccination on population immunity, and the need for further booster vaccinations in different population groups.
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how to cite this article
Leon-Rojas JE, Veloz T, Teran J et al. The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.12688/f1000research.126577.2)
NOTE: If applicable, it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Not approvedFundamental flaws in the paper seriously undermine the findings and conclusions
Version 2
VERSION 2
PUBLISHED 23 Feb 2024
Revised
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How to cite this report:
Nicolai E. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.162983.r250296)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v2#referee-response-250296
https://f1000research.com/articles/11-1392/v2#referee-response-250296
NOTE: it is important to ensure the information in square brackets after the title is included in this citation.
Reviewer Report 26 Feb 2024
Eleonora Nicolai,
Department of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy
Approved
VIEWS 6
I appreciated your work highlighting the importance of the change in T lymphocytes and antibodies for different immune conditions. I found your work well written. I have only a few minor concerns:
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HOW TO CITE THIS REPORT
Nicolai E. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.162983.r250296)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v2#referee-response-250296
https://f1000research.com/articles/11-1392/v2#referee-response-250296
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
Version 1
VERSION 1
PUBLISHED 28 Nov 2022
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How to cite this report:
Lassaunière R. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.139005.r216384)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v1#referee-response-216384
https://f1000research.com/articles/11-1392/v1#referee-response-216384
NOTE: it is important to ensure the information in square brackets after the title is included in this citation.
Reviewer Report 15 Nov 2023
Approved with Reservations
VIEWS 10
The well-written protocol addresses relevant questions regarding antibody dynamics, factors associated with seroconversion, longitudinal changes in IgG and IgA levels, and the effect of vaccination on waning antibody levels. A strength of the study is the longitudinal design, inclusion of
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HOW TO CITE THIS REPORT
Lassaunière R. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.139005.r216384)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v1#referee-response-216384
https://f1000research.com/articles/11-1392/v1#referee-response-216384
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Author Response 10 Apr 2024Jose Leon-Rojas, Red Grups de Recerca d’Amèrica i Àfrica Llatines (GRAAL),, Quito, Ecuador10 Apr 2024Author ResponseComment 1: The well-written protocol addresses relevant questions regarding antibody dynamics, factors associated with seroconversion, longitudinal changes in IgG and IgA levels, and the effect of vaccination on waning antibody ... Continue reading
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Author Response 10 Apr 2024Jose Leon-Rojas, Red Grups de Recerca d’Amèrica i Àfrica Llatines (GRAAL),, Quito, Ecuador10 Apr 2024Author ResponseComment 1: The well-written protocol addresses relevant questions regarding antibody dynamics, factors associated with seroconversion, longitudinal changes in IgG and IgA levels, and the effect of vaccination on waning antibody ... Continue reading
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Lin CY. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.139005.r191772)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v1#referee-response-191772
https://f1000research.com/articles/11-1392/v1#referee-response-191772
NOTE: it is important to ensure the information in square brackets after the title is included in this citation.
Reviewer Report 01 Aug 2023
Approved with Reservations
VIEWS 17
In the study protocol, Leon-Rojas et al. proposed a longitudinal cohort study to follow 1000 adults with varying SARS-CoV-2 exposure and to monitor the change in antibody levels against SARS-CoV-2 spike. Participant demographic information and baseline samples are collected at
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Lin CY. Reviewer Report For: The dynamics and determinants of specific systemic and mucosal antibody responses to SARS-CoV-2 in three adult cohorts in the Ecuadorian Andes: a study protocol [version 2; peer review: 1 approved, 2 approved with reservations]. F1000Research 2024, 11:1392 (https://doi.org/10.5256/f1000research.139005.r191772)
The direct URL for this report is:
https://f1000research.com/articles/11-1392/v1#referee-response-191772
https://f1000research.com/articles/11-1392/v1#referee-response-191772
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Author Response 13 Apr 2024Jose Leon-Rojas, Red Grups de Recerca d’Amèrica i Àfrica Llatines (GRAAL),, Quito, Ecuador13 Apr 2024Author ResponseComment 1: The introduction provides a comprehensive overview of the seroprevalence studies that have been conducted in Latin America. However, the rationale for the study is not explicitly stated until ... Continue reading
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Author Response 13 Apr 2024Jose Leon-Rojas, Red Grups de Recerca d’Amèrica i Àfrica Llatines (GRAAL),, Quito, Ecuador13 Apr 2024Author ResponseComment 1: The introduction provides a comprehensive overview of the seroprevalence studies that have been conducted in Latin America. However, the rationale for the study is not explicitly stated until ... Continue reading
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