All Research Articles

261-280 of 638 ARTICLES
https://doi.org/10.12688/f1000research.20210.2
Software Tool Article metrics
Revised
HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
[version 2; peer review: 2 approved]
Peer Reviewers Shila Ghazanfar; Laurent Gatto
  • Funder
  • Universität Zürich
LATEST VERSION PUBLISHED 04 Dec 2019
https://doi.org/10.12688/f1000research.20887.3
Software Tool Article metrics
Revised
RCy3: Network biology using Cytoscape from within R
[version 3; peer review: 3 approved]
Peer Reviewers James Denvir; Krithika Bhuvaneshwar; Ludwig Geistlinger
  • Funders
  • Google
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 04 Dec 2019
https://doi.org/10.12688/f1000research.19481.1
Review metrics
Metabolic phenotyping of the human microbiome
[version 1; peer review: 2 approved]
Peer Reviewers Robert E Brown; Jack A Gilbert
  • Funders
  • Department of Agriculture, Food and the Marine
  • Science Foundation Ireland
PUBLISHED 22 Nov 2019
https://doi.org/10.12688/f1000research.20002.1
Review metrics
Past, present, and future efforts to enhance the efficacy of cord blood hematopoietic cell transplantation
[version 1; peer review: 3 approved]
Peer Reviewers Jonathan Hoggatt; Mariusz Ratajczak; Elizabeth J Shpall
  • Funders
  • NIH/NHLBI
  • NIH/NIDDK
PUBLISHED 31 Oct 2019
https://doi.org/10.12688/f1000research.20415.1
Software Tool Article metrics
SNPnotes: high-throughput tissue-specific functional annotation of single nucleotide variants
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Deepti Jain; Pavel P. Kuksa
PUBLISHED 22 Oct 2019
https://doi.org/10.12688/f1000research.18866.2
Software Tool Article metrics
Revised
MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data
[version 2; peer review: 2 approved]
Peer Reviewers Saskia Hiltemann; Leo Lahti
  • Funder
  • Australian Institute of Tropical Health and Medicine
LATEST VERSION PUBLISHED 18 Oct 2019
https://doi.org/10.12688/f1000research.20136.1
Opinion Article metrics
An intrinsically disordered proteins community for ELIXIR
[version 1; peer review: 2 approved]
Peer Reviewers Iva Pritisanac and Julie Forman-Kay; Osman Ugur Sezerman
  • Funders
  • Vetenskapsrådet
  • BBSRC
  • European Molecular Biology Laboratory
  • Carlsberg Foundation Distinguished Fellowship
  • National Institutes of Health
  • Israel I-CORE Project
  • ELIXIR
  • Danmarks Grundforskningsfond
  • Instruct-ERIC
  • Swiss Federal Government
  • Marie Skłodowska-Curie
  • COST Action BM1405 NGP-net
  • Wellcome Trust
PUBLISHED 15 Oct 2019
https://doi.org/10.12688/f1000research.18490.3
Research Article metrics
Revised
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Saskia Freytag; Jimmy Tsz Hang Lee and Tallulah Andrews; Lindsay Cowell
  • Funders
  • National Resource for Network Biology
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 14 Oct 2019
https://doi.org/10.12688/f1000research.18238.1
Opinion Article metrics
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Todd J. Vision; João Moreira
  • Funder
  • National Bioscience Database Center, the Japan Science and Technology Agency (JST)
PUBLISHED 23 Sep 2019
https://doi.org/10.12688/f1000research.19029.2
Software Tool Article metrics
Revised
Network-based Observability and Controllability Analysis of Dynamical Systems: the NOCAD toolbox
[version 2; peer review: 2 approved]
Peer Reviewers Gilles Didier; Arthur Montanari, Ercílio Moreira and Luis A. Aguirre
  • Funders
  • Emberi Eroforrások Minisztériuma
  • Országos Tudományos Kutatási Alapprogramok
LATEST VERSION PUBLISHED 18 Sep 2019
https://doi.org/10.12688/f1000research.19427.1
Research Article metrics
Understanding life sciences data curation practices via user research
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Lynette Hirschman; Cecilia N. Arighi
  • Funder
  • European Commission
PUBLISHED 11 Sep 2019
https://doi.org/10.12688/f1000research.20421.1
Research Article metrics
Optimal price-based control of heterogeneous thermostatically controlled loads under uncertainty using LSTM networks and genetic algorithms
[version 1; peer review: 2 approved with reservations, 1 not approved]
Peer Reviewers Matsukawa Shun; Chiou-Jye Huang; Shanti Swarup
  • Funder
  • Jenny ja Antti Wihurin Rahasto
PUBLISHED 10 Sep 2019
https://doi.org/10.12688/f1000research.17204.3
Data Note metrics
Revised
Pan-cancer repository of validated natural and cryptic mRNA splicing mutations
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Emanuele Buratti; Francesca D. Ciccarelli; W.W.M. Pim Pijnappel
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • CytoGnomix Inc.
  • Compute Canada
  • Canadian Foundation for Innovation
  • Canada Research Chairs
  • Shared Hierarchical Academic Research Computing Network
LATEST VERSION PUBLISHED 06 Sep 2019
https://doi.org/10.12688/f1000research.20408.1
Editorial metrics NOT PEER REVIEWED
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.18705.2
Research Article metrics
Revised
Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Lei Xie and Yue Qiu; Silvia Pineda San Juan; Ana Conesa and Manuel Ugidos
  • Funders
  • Fonds National de la Recherche Luxembourg
  • Joachim Herz Stiftung
LATEST VERSION PUBLISHED 27 Aug 2019
https://doi.org/10.12688/f1000research.20193.1
Data Note metrics
Curation of an intensive care research dataset from routinely collected patient data in an NHS trust.
[version 1; peer review: 2 approved]
Peer Reviewers J Duncan Young; Min Ji Lee and Steve Harris
  • Funders
  • Above and Beyond
  • Engineering and Physical Sciences Research Council
PUBLISHED 19 Aug 2019
https://doi.org/10.12688/f1000research.14613.2
Software Tool Article metrics
Revised
CyTargetLinker app update: A flexible solution for network extension in Cytoscape
[version 2; peer review: 2 approved]
Peer Reviewers Alex Gutteridge; John H. Morris
  • Funders
  • ELIXIR
  • Dutch Province of Limburg
LATEST VERSION PUBLISHED 13 Aug 2019
https://doi.org/10.12688/f1000research.16083.2
Software Tool Article metrics
Revised
seqCAT: a Bioconductor R-package for variant analysis of high throughput sequencing data
[version 2; peer review: 1 approved, 1 not approved]
Peer Reviewers Matej Lexa; Jean Fan
  • Funder
  • European Community 7th Framework Program
LATEST VERSION PUBLISHED 12 Aug 2019
https://doi.org/10.12688/f1000research.16817.2
Research Article metrics
Revised
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
[version 2; peer review: 2 approved, 3 approved with reservations]
Peer Reviewers Alfonso Benítez-Páez; Rasmus H. Kirkegaard; Amanda Warr; Kon Chu; Lee J. Kerkhof
  • Funder
  • Agència de Gestió d’Ajuts Universitaris i de Recerca
LATEST VERSION PUBLISHED 01 Aug 2019
https://doi.org/10.12688/f1000research.20027.1
Software Tool Article metrics
ChIPdig: a comprehensive user-friendly tool for mining multi-sample ChIP-seq data
[version 1; peer review: 3 approved with reservations]
Peer Reviewers Tao Liu; Hinrich Gronemeyer and Marco Antonio Mendoza-Parra; Thomas Carroll
  • Funder
  • National Institutes of Health
PUBLISHED 31 Jul 2019
261-280 of 638 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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