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https://doi.org/10.12688/f1000research.12974.1
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Using bio.tools to generate and annotate workbench tool descriptions
[version 1; peer review: 4 approved]
Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael Crusoe, Hedi Peterson, Jon Ison, Hervé Ménager
Peer Reviewers Michael L. Heuer; Christopher J. Fields; Manuel Corpas; Brian O'Connor
  • Funder
  • Horizon 2020
PUBLISHED 30 Nov 2017
https://doi.org/10.12688/f1000research.12365.1
Review metrics
Whole-exome sequencing for detecting inborn errors of immunity: overview and perspectives
[version 1; peer review: 2 approved]
Barbara Bosch, Yuval Itan, Isabelle Meyts
Peer Reviewers Claudio Pignata; Janet Chou
  • Funders
  • National Institute of Allergy and Infectious Diseases
  • March of Dimes Foundation
  • Fonds Wetenschappelijk Onderzoek
  • Jeffrey Modell Foundation
  • Boehringer Ingelheim Fonds
PUBLISHED 28 Nov 2017
https://doi.org/10.12688/f1000research.12399.1
Review metrics
Diagnosing alpha-1 antitrypsin deficiency: the first step in precision medicine
[version 1; peer review: 3 approved]
Craig P. Hersh
Peer Reviewers Marc Miravitlles; Bibek Gooptu; Elizabeth Sapey
  • Funder
  • National Institutes of Health
PUBLISHED 27 Nov 2017
https://doi.org/10.12688/f1000research.12781.1
Software Tool Article metrics
NastyBugs: A simple method for extracting antimicrobial resistance information from metagenomes
[version 1; peer review: 2 approved with reservations]
Hsinyi Tsang, Matthew Moss, Greg Fedewa, Sharif Farag, Daniel Quang, Alexey V. Rakov, Ben Busby
Peer Reviewers Torsten Seemann; Tom J. B. de Man
  • Funders
  • U.S. National Library of Medicine
  • National Cancer Institute
PUBLISHED 08 Nov 2017
https://doi.org/10.12688/f1000research.11633.1
Review metrics
Promising neuroprotective strategies for traumatic spinal cord injury with a focus on the differential effects among anatomical levels of injury
[version 1; peer review: 2 approved]
Antigona Ulndreaj, Anna Badner, Michael G Fehlings
Peer Reviewers Patrick Freund; Marios Papadopoulos
PUBLISHED 30 Oct 2017
https://doi.org/10.12688/f1000research.12342.2
Opinion Article metrics
Revised
The future of metabolomics in ELIXIR
[version 2; peer review: 3 approved]
Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-Garcia, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K. Moschonas, Steffen Neumann, Claire O’Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
Peer Reviewers Charles F. Burant; Carl Brunius; Emmanuel Mikros
  • Funder
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 30 Oct 2017
https://doi.org/10.12688/f1000research.11493.1
Review metrics
Glioblastoma update: molecular biology, diagnosis, treatment, response assessment, and translational clinical trials
[version 1; peer review: 2 approved]
Frank Lieberman
Peer Reviewers Mark R Gilbert; Timothy F Cloughesy
PUBLISHED 26 Oct 2017
https://doi.org/10.12688/f1000research.12564.2
Data Note metrics
Revised
BeerDeCoded: the open beer metagenome project
[version 2; peer review: 2 approved, 1 approved with reservations]
Jonathan Sobel, Luc Henry, Nicolas Rotman, Gianpaolo Rando
Peer Reviewers Bastian Greshake; Matthew L. Bochman; Kristoffer Krogerus
  • Funder
  • Crowdfunding
LATEST VERSION PUBLISHED 20 Oct 2017
https://doi.org/10.12688/f1000research.12929.1
Editorial metrics NOT PEER REVIEWED
The 2017 Bioinformatics Open Source Conference (BOSC)
[version 1; peer review: not peer reviewed]
Nomi L. Harris, Peter J.A. Cock, Brad Chapman, Christopher J. Fields, Karsten Hokamp, Hilmar Lapp, Monica Munoz-Torres, Bastian Greshake Tzovaras, Heather Wiencko
PUBLISHED 19 Oct 2017
https://doi.org/10.12688/f1000research.11603.1
Review metrics
The emerging role of PET imaging in dementia
[version 1; peer review: 3 approved]
Leonardo Iaccarino, Arianna Sala, Silvia Paola Caminiti, Daniela Perani
Peer Reviewers Adriaan Lammertsma; Sabina Pappata; Karl Herholz
PUBLISHED 12 Oct 2017
https://doi.org/10.12688/f1000research.10937.2
Research Article metrics
Revised
In silico analysis of single nucleotide polymorphisms (SNPs) in human FOXC2 gene
[version 2; peer review: 2 approved]
Mohammed Nimir, Mohanad Abdelrahim, Mohamed Abdelrahim, Mahil Abdalla, Wala eldin Ahmed, Muhanned Abdullah, Muzamil Mahdi Abdel Hamid
Peer Reviewers Pascal Brouillard; Fengkai Zhang
LATEST VERSION PUBLISHED 09 Oct 2017
https://doi.org/10.12688/f1000research.12516.1
Software Tool Article metrics
Tools for annotation and comparison of structural variation
[version 1; peer review: 1 approved, 2 approved with reservations]
Fritz J. Sedlazeck, Andi Dhroso, Dale L. Bodian, Justin Paschall, Farrah Hermes, Justin M. Zook
Peer Reviewers Mitchell A. Bekritsky; Andrew Carroll; Aaron R. Quinlan
  • Funders
  • Inova Health System
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 03 Oct 2017
https://doi.org/10.12688/f1000research.12772.1
Editorial metrics NOT PEER REVIEWED
Expanding the chemical information science gateway
[version 1; peer review: not peer reviewed]
Jürgen Bajorath
PUBLISHED 27 Sep 2017
https://doi.org/10.12688/f1000research.11417.1
Review metrics
Bacterial vaginosis
[version 1; peer review: 2 approved]
Phillip Hay
Peer Reviewers Amanda Lewis; Catriona Bradshaw
PUBLISHED 27 Sep 2017
https://doi.org/10.12688/f1000research.12223.1
Method Article metrics
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
[version 1; peer review: 1 approved, 2 approved with reservations]
Leonardo Collado-Torres, Abhinav Nellore, Andrew E. Jaffe
Peer Reviewers Davide Risso; Alejandro Reyes; Nick Schurch
  • Funder
  • National Institutes of Health
PUBLISHED 24 Aug 2017
https://doi.org/10.12688/f1000research.12332.1
Opinion Article metrics
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training
[version 1; peer review: 2 approved]
Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via
Peer Reviewers Jason J. Williams; Kim T. Gurwitz
  • Funder
  • ELIXIR-EXCELERATE
PUBLISHED 24 Aug 2017
https://doi.org/10.12688/f1000research.12168.1
Method Article metrics
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data
[version 1; peer review: 2 approved]
Chao Zhang, Jochem Bijlard, Christine Staiger, Serena Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino Da Silva Santos, Jeroen Belien, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond Fijneman, J. Dylan Spalding, Sanne Abeln
Peer Reviewers Hervé Ménager; Gilbert S. Omenn
  • Funders
  • CTMM-TraIT
  • Horizon 2020
PUBLISHED 16 Aug 2017
https://doi.org/10.12688/f1000research.11543.1
Review metrics
Co-evolution techniques are reshaping the way we do structural bioinformatics
[version 1; peer review: 2 approved]
Saulo de Oliveira, Charlotte Deane
Peer Reviewers David Baker; Johannes Söding
  • Funder
  • Engineering and Physical Sciences Research Council
PUBLISHED 25 Jul 2017
https://doi.org/10.12688/f1000research.11495.1
Review metrics
New frontiers in metabolomics: from measurement to insight
[version 1; peer review: 3 approved]
Eli Riekeberg, Robert Powers
Peer Reviewers Brent Winston; Uwe Christians; Christoph Steinbeck
  • Funders
  • Nebraska Research Council
  • Nebraska Tobacco Settlement Biomedical Research Development Fund
  • Nebraska Center for Integrated Biomolecular Communication Systems Biology Core (NIH National Institute of General Medical Sciences)
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 19 Jul 2017
https://doi.org/10.12688/f1000research.10750.2
Review metrics
Revised
General guidelines for biomedical software development
[version 2; peer review: 2 approved]
Luis Bastiao Silva, Rafael C. Jimenez, Niklas Blomberg, José Luis Oliveira
Peer Reviewers João P. G. L. M.  Rodrigues; Victor Maojo
  • Funders
  • European Federation of Pharmaceutical Industries and Associations
  • Horizon 2020
LATEST VERSION PUBLISHED 12 Jul 2017
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