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https://doi.org/10.12688/f1000research.12886.1
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Recent advances in understanding and managing retinal vein occlusions
[version 1; peer review: 3 approved]
Daniel D. Esmaili, David S. Boyer
Peer Reviewers Michael Brent; Akiatka Tsujikawa; Hans Hoerauf
PUBLISHED 16 Apr 2018
https://doi.org/10.12688/f1000research.12989.2
Research Article metrics
Revised
Funding knowledgebases: Towards a sustainable funding model for the UniProt use case
[version 2; peer review: 3 approved]
Chiara Gabella, Christine Durinx, Ron Appel
Peer Reviewers Helen M. Berman and John Westbrook; Eva Huala and Tanya Z. Berardini; Judith A. Blake
  • Funder
  • ELIXIR
LATEST VERSION PUBLISHED 22 Mar 2018
https://doi.org/10.12688/f1000research.13633.1
Method Article metrics
A new environmental monitoring system for silkworm incubators
[version 1; peer review: 1 approved, 1 approved with reservations]
Alejandra Duque-Torres, Carlos Rodriguez-Pabon, Juan Ruiz-Rosero, Giselle Zambrano-Gonzalez, Martha Almanza-Pinzon, Oscar Mauricio Caicedo Rendon, Gustavo Ramirez-Gonzalez
Peer Reviewers Enrico Petritoli and Fabio Leccese; LalBihari Barik
  • Funders
  • InnovAcción Cauca
  • Universidad del Cauca
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.12865.1
Software Tool Article metrics
Abstract Sifter: a comprehensive front-end system to PubMed
[version 1; peer review: 2 approved]
Nancy Baker, Thomas Knudsen, Antony J. Williams
Peer Reviewers Pauliina Damdimopoulou and Astrud Tuck; Qingliang (Leon) Li
  • Funder
  • U.S. Environmental Protection Agency
PUBLISHED 21 Dec 2017
https://doi.org/10.12688/f1000research.12974.1
Software Tool Article metrics
Using bio.tools to generate and annotate workbench tool descriptions
[version 1; peer review: 4 approved]
Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Michael Crusoe, Hedi Peterson, Jon Ison, Hervé Ménager
Peer Reviewers Michael L. Heuer; Christopher J. Fields; Manuel Corpas; Brian O'Connor
  • Funder
  • Horizon 2020
PUBLISHED 30 Nov 2017
https://doi.org/10.12688/f1000research.12342.2
Opinion Article metrics
Revised
The future of metabolomics in ELIXIR
[version 2; peer review: 3 approved]
Merlijn van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-Garcia, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K. Moschonas, Steffen Neumann, Claire O’Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
Peer Reviewers Charles F. Burant; Carl Brunius; Emmanuel Mikros
  • Funder
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 30 Oct 2017
https://doi.org/10.12688/f1000research.10401.2
Research Article metrics
Revised
Texture analysis of the developing human brain using customization of a knowledge-based system
[version 2; peer review: 2 not approved]
Hugues Gentillon, Ludomir Stefańczyk, Michał Strzelecki, Maria Respondek-Liberska
Peer Reviewers Michael Hanke; Sanjay Kalra and Abdullah Ishaque
  • Funder
  • Uniwersytet Medyczny w Lodzi
LATEST VERSION PUBLISHED 11 Sep 2017
https://doi.org/10.12688/f1000research.12228.2
Research Article metrics
Revised
Exploring differential evolution for inverse QSAR analysis
[version 2; peer review: 3 approved]
Tomoyuki Miyao, Kimito Funatsu, Jürgen Bajorath
Peer Reviewers Hans Matter; Brian Goldman; W. Patrick Walters
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 06 Sep 2017
https://doi.org/10.12688/f1000research.12404.1
Research Article metrics
Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data
[version 1; peer review: 3 approved]
Tung Manh Ho, Ha Viet Nguyen, Thu-Trang Vuong, Quang-Minh Dam, Hiep-Hung Pham, Quan-Hoang Vuong
Peer Reviewers Tuyen Quang Tran; Donaldine E . Samson; Ly Thi Tran
PUBLISHED 24 Aug 2017
https://doi.org/10.12688/f1000research.12314.1
Research Note metrics
A bibliometric analysis of the global research on sofosbuvir
[version 1; peer review: 1 approved, 2 approved with reservations]
Akram Hernández-Vásquez, Diego Rosselli
Peer Reviewers Juliana Gonçalves Reis; Samy A Azer; Thiago Moreno L. Souza
PUBLISHED 22 Aug 2017
https://doi.org/10.12688/f1000research.12168.1
Method Article metrics
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data
[version 1; peer review: 2 approved]
Chao Zhang, Jochem Bijlard, Christine Staiger, Serena Scollen, David van Enckevort, Youri Hoogstrate, Alexander Senf, Saskia Hiltemann, Susanna Repo, Wibo Pipping, Mariska Bierkens, Stefan Payralbe, Bas Stringer, Jaap Heringa, Andrew Stubbs, Luiz Olavo Bonino Da Silva Santos, Jeroen Belien, Ward Weistra, Rita Azevedo, Kees van Bochove, Gerrit Meijer, Jan-Willem Boiten, Jordi Rambla, Remond Fijneman, J. Dylan Spalding, Sanne Abeln
Peer Reviewers Hervé Ménager; Gilbert S. Omenn
  • Funders
  • CTMM-TraIT
  • Horizon 2020
PUBLISHED 16 Aug 2017
https://doi.org/10.12688/f1000research.7727.3
Method Article metrics
Revised
A novel data storage logic in the cloud
[version 3; peer review: 2 approved, 1 not approved]
Bence Mátyás, Gabriela Bautista, Máté Szarka, Gábor Járvás, Gábor Kusper, István Argay, Alice Fialowski, György Mátyás
Peer Reviewers Jan Lindström; Kavita Sunil Oza; Mansaf Alam
LATEST VERSION PUBLISHED 15 Aug 2017
https://doi.org/10.12688/f1000research.9751.2
Software Tool Article metrics
Revised
dot-app: a Graphviz-Cytoscape conversion plug-in
[version 2; peer review: 4 approved]
Braxton Fitts, Ziran Zhang, Massoud Maher, Barry Demchak
Peer Reviewers Eric Bonnet; Matthias König; David J. Lynn and John Salamon; Giovanni Scardoni
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 10 Jul 2017
https://doi.org/10.12688/f1000research.11718.1
Opinion Article metrics
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
[version 1; peer review: 3 approved]
Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble
Peer Reviewers Erin A. Becker; Anelda P. van der Walt and Juan Steyn; Laurent Gatto
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.10788.1
Review metrics
Recent advances in predicting gene–disease associations
[version 1; peer review: 2 approved]
Kenneth Opap, Nicola Mulder
Peer Reviewers Kathryn Burdon; Meridee Wouters
  • Funder
  • National Institutes of Health
PUBLISHED 26 Apr 2017
https://doi.org/10.12688/f1000research.10416.1
Review metrics
Lyssaviruses and rabies: current conundrums, concerns, contradictions and controversies
[version 1; peer review: 2 approved]
Charles Rupprecht, Ivan Kuzmin, Francois Meslin
Peer Reviewers Nicholas Johnson; James Childs
PUBLISHED 23 Feb 2017
https://doi.org/10.12688/f1000research.10443.1
Method Article metrics
ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services
[version 1; peer review: 1 approved, 2 approved with reservations]
Espen Mikal Robertsen, Hubert Denise, Alex Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen
Peer Reviewers Marla I. Trindade and Leonardo van Zyl; Takashi Gojobori; Anders Blomberg
  • Funders
  • ELIXIR
  • EMBL-EBI
  • Universitetet i Tromsø
PUBLISHED 23 Jan 2017
https://doi.org/10.12688/f1000research.10058.1
Software Tool Article metrics
CanVar: A resource for sharing germline variation in cancer patients
[version 1; peer review: 4 approved]
Daniel Chubb, Peter Broderick, Sara E. Dobbins, Richard S. Houlston
Peer Reviewers Laura Valle and Victor Moreno; Pavel Vodička; Wolfgang Huber and Vladislav Kim; James Ware and Nicola Whiffin
  • Funders
  • Bloodwise
  • Seventh Framework Programme
  • Cancer Research UK
PUBLISHED 05 Dec 2016
https://doi.org/10.12688/f1000research.8282.1
Method Article metrics
Using complex networks for refining survival prognosis in prostate cancer patient
[version 1; peer review: 2 approved]
Massimiliano Zanin
Peer Reviewers Osvaldo Anibal Rosso; Diego Raphael Amancio
PUBLISHED 16 Nov 2016
https://doi.org/10.12688/f1000research.8680.1
Method Article metrics
Three general concepts to improve risk prediction: good data, wisdom of the crowd, recalibration
[version 1; peer review: 2 approved with reservations]
Ivan Kondofersky, Michael Laimighofer, Christoph Kurz, Norbert Krautenbacher, Julia F. Söllner, Philip Dargatz, Hagen Scherb, Donna P. Ankerst, Christiane Fuchs
Peer Reviewers Sebastian Pölsterl; Riccardo de Bin
PUBLISHED 16 Nov 2016
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