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https://doi.org/10.12688/f1000research.20887.3
Software Tool Article metrics
Revised
RCy3: Network biology using Cytoscape from within R
[version 3; peer review: 3 approved]
Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Peer Reviewers James Denvir; Krithika Bhuvaneshwar; Ludwig Geistlinger
  • Funders
  • Google
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 04 Dec 2019
https://doi.org/10.12688/f1000research.20072.2
Method Article metrics
Revised
A new statistical method to analyze Morris Water Maze data using Dirichlet distribution
[version 2; peer review: 2 approved]
Marianne Maugard, Cyrille Doux, Gilles Bonvento
Peer Reviewers Richard GM Morris; Avgoustinos Vouros, Luca Manneschi and Eleni Vasilaki
  • Funders
  • Association France Alzheimer
  • Fondation de France
  • Fondation Plan Alzheimer
LATEST VERSION PUBLISHED 28 Oct 2019
https://doi.org/10.12688/f1000research.20843.1
Software Tool Article metrics
Creating and sharing reproducible research code the workflowr way
[version 1; peer review: 3 approved]
John D. Blischak, Peter Carbonetto, Matthew Stephens
Peer Reviewers Peter F. Hickey; Przemysław Biecek; Peter Baker
  • Funder
  • Gordon and Betty Moore Foundation
PUBLISHED 14 Oct 2019
https://doi.org/10.12688/f1000research.16216.2
Software Tool Article metrics
Revised
Feature selection with the R package MXM
[version 2; peer review: 2 approved]
Michail Tsagris, Ioannis Tsamardinos
Peer Reviewers Thodoris Kypraios; Huitong Qiu
  • Funder
  • Seventh Framework Programme
LATEST VERSION PUBLISHED 30 Sep 2019
https://doi.org/10.12688/f1000research.18310.2
Research Note metrics
Revised
Causes of reporting bias: a theoretical framework
[version 2; peer review: 2 approved]
Jenny T van der Steen, Gerben ter Riet, Cornelis A van den Bogert, Lex M Bouter
Peer Reviewers Ksenija Bazdaric; Arnaud Vaganay
  • Funders
  • Netherlands Organisation for Scientific Research (NWO)
  • H2020 European Research Council
  • Leiden University Medical Center, Leiden, The Netherlands
LATEST VERSION PUBLISHED 17 Jul 2019
https://doi.org/10.12688/f1000research.19557.1
Research Article metrics PEER REVIEW DISCONTINUED
Climate change in the UAE: Modeling air temperature using ARIMA and STI across four bio-climatic zones
[version 1; peer review: peer review discontinued]
Taoufik Saleh Ksiksi, Latifa Saeed Al-Blooshi
Peer Reviewers Invited
  • Funder
  • United Arab Emirates University
PUBLISHED 26 Jun 2019
https://doi.org/10.12688/f1000research.19375.1
Research Article metrics
Accumulation Bias in meta-analysis: the need to consider time in error control
[version 1; peer review: 2 approved]
Judith ter Schure, Peter Grünwald
Peer Reviewers Steven P. Ellis; Joanna IntHout
  • Funder
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek
PUBLISHED 25 Jun 2019
https://doi.org/10.12688/f1000research.19661.1
Research Article metrics
Towards a new model for producing evidence-based guidelines: a qualitative study of current approaches and opportunities for innovation among Australian guideline developers
[version 1; peer review: 2 approved]
Steve McDonald, Julian H. Elliott, Sally Green, Tari Turner
Peer Reviewers Tracy Merlin; Amanda Leach
  • Funders
  • Cochrane
  • National Health and Medical Research Council
PUBLISHED 24 Jun 2019
https://doi.org/10.12688/f1000research.13490.5
Research Article metrics
Revised
Does evidence support the high expectations placed in precision medicine? A bibliographic review
[version 5; peer review: 2 approved, 1 approved with reservations, 3 not approved]
Jordi Cortés, José Antonio González, María Nuncia Medina, Markus Vogler, Marta Vilaró, Matt Elmore, Stephen John Senn, Michael Campbell, Erik Cobo
Peer Reviewers Ian R. White; Erica E.M. Moodie; Saskia le Cessie; Richard Stevens and David Nunan; Vance W. Berger; Dennis W. Lendrem
  • Funders
  • Departament d'Economia i Coneixement de la Generalitat de Catalunya
  • Ministerio de Economía y Competitividad
  • H2020 Marie Skłodowska-Curie Actions
LATEST VERSION PUBLISHED 10 Jun 2019
https://doi.org/10.12688/f1000research.15512.3
Research Article metrics
Revised
Factors influencing malignant mesothelioma survival: a retrospective review of the National Mesothelioma Virtual Bank cohort
[version 3; peer review: 2 approved, 1 approved with reservations]
Waqas Amin, Faina Linkov, Douglas P. Landsittel, Jonathan C. Silverstein, Wiam Bshara, Carmelo Gaudioso, Michael D. Feldman, Harvey I. Pass, Jonathan Melamed, Joseph S. Friedberg, Michael J. Becich
Peer Reviewers Nico van Zandwijk; Michele Carbone; Tobias Peikert
  • Funders
  • Centers for Disease Control and Prevention
  • National Institute for Occupational Safety and Health
LATEST VERSION PUBLISHED 03 Jun 2019
https://doi.org/10.12688/f1000research.19310.1
Software Tool Article metrics
A new method for detecting abrupt shifts in time series
[version 1; peer review: 2 approved with reservations]
Chris A. Boulton, Timothy M. Lenton
Peer Reviewers Valerie N. Livina; Sonia Kéfi
  • Funder
  • Natural Environment Research Council
PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.18939.1
Research Article metrics
Clinical trial
Does handwriting the name of a potential trial participant on an invitation letter improve recruitment rates? A randomised controlled study within a trial
[version 1; peer review: 2 approved]
Jennifer McCaffery, Alex S. Mitchell, Caroline Fairhurst, Sarah Cockayne, Sara Rodgers, Clare Relton, David J. Torgerson, OTIS Study Team
Peer Reviewers Martin C. Gulliford; Miles D. Witham
  • Funders
  • Health Technology Assessment Programme
  • York University
PUBLISHED 14 May 2019
https://doi.org/10.12688/f1000research.18636.1
Method Article metrics
A Bioconductor workflow for the Bayesian analysis of spatial proteomics
[version 1; peer review: 1 approved, 2 approved with reservations]
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D.W. Kirk, Laurent Gatto
Peer Reviewers Pierre M. Jean Beltran; Susan Holmes; Angus Lamond and Alejandro Brenes Murillo
  • Funders
  • Medical Research Council
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.17352.2
Research Note metrics
Revised
A simple formula for enumerating comparisons in trials and network meta-analysis
[version 2; peer review: 2 approved]
Farhad Shokraneh, Clive E. Adams
Peer Reviewers Julie Broderick; G. Mustafa Soomro
  • Funder
  • None
LATEST VERSION PUBLISHED 03 Apr 2019
https://doi.org/10.12688/f1000research.16358.2
Opinion Article metrics
Revised
Three more steps toward better science
[version 2; peer review: 2 approved]
Jose D. Perezgonzalez
Peer Reviewers Ben van Calster; Lincoln J. Colling
LATEST VERSION PUBLISHED 01 Apr 2019
https://doi.org/10.12688/f1000research.18681.1
Research Article metrics
The common patterns of abundance: the log series and Zipf's law
[version 1; peer review: 4 approved]
Steven A. Frank
Peer Reviewers Luís M. A. Bettencourt; Jose Lobo; Scott E. Page; Neil McRoberts
  • Funder
  • The Donald Bren Foundation
PUBLISHED 25 Mar 2019
https://doi.org/10.12688/f1000research.15997.1
Review metrics
Recent advances in biomedical simulations: a manifesto for model engineering
[version 1; peer review: 3 approved]
Joseph L. Hellerstein, Stanley Gu, Kiri Choi, Herbert M. Sauro
Peer Reviewers Robert Hoehndorf; Shuichi Onami; Martin Meier-Schellersheim
  • Funders
  • Gordon and Betty Moore Foundation
  • Alfred P. Sloan Foundation
  • NIH
  • NIAID
PUBLISHED 05 Mar 2019
https://doi.org/10.12688/f1000research.16613.2
Research Article metrics
Revised
False signals induced by single-cell imputation
[version 2; peer review: 4 approved]
Tallulah S. Andrews, Martin Hemberg
Peer Reviewers Simone Tiberi; Jean Fan; Charlotte Soneson; Stephanie C Hicks
  • Funders
  • Chan Zuckerberg Initiative
  • Wellcome Trust
LATEST VERSION PUBLISHED 05 Mar 2019
https://doi.org/10.12688/f1000research.14591.2
Research Article metrics
Clinical trial
Revised
A study update newsletter or Post-it® note did not increase postal questionnaire response rates in a falls prevention trial: an embedded randomised factorial trial
[version 2; peer review: 2 approved]
Sara Rodgers, Illary Sbizzera, Sarah Cockayne, Caroline Fairhurst, Sarah E. Lamb, Wesley Vernon, Judith Watson, Catherine Hewitt, David J. Torgerson
Peer Reviewers Shaun P. Treweek; Phil J. Edwards and Benjamin Woolf
  • Funders
  • National Institute for Health Research
  • York Trials Unit
LATEST VERSION PUBLISHED 19 Feb 2019
https://doi.org/10.12688/f1000research.17961.1
Correspondence metrics
Sensory-specific predictive models in the human anterior insula
[version 1; peer review: 2 approved]
Gil Sharvit, Patrik Vuilleumier, Corrado Corradi-Dell'Acqua
Peer Reviewers Lauren Y. Atlas and In-Seon Lee; Daniele Romano
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
PUBLISHED 06 Feb 2019
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