All Research Articles

961-980 of 1,017 ARTICLES
https://doi.org/10.12688/f1000research.4492.2
Software Tool Article metrics
Revised
Cytoscape: the network visualization tool for GenomeSpace workflows
[version 2; peer review: 3 approved]
Peer Reviewers Aris Floratos; Gabriela Bindea and Bernhard Mlecnik; Jan Aerts
LATEST VERSION PUBLISHED 26 Aug 2014
https://doi.org/10.12688/f1000research.3-38.v2
Opinion Article metrics
Revised
Ethical research standards in a world of big data
[version 2; peer review: 3 approved with reservations]
Peer Reviewers Tristan Henderson; Sherry Emery; Christophe Giraud-Carrier
LATEST VERSION PUBLISHED 21 Aug 2014
https://doi.org/10.12688/f1000research.4702.1
Software Tool Article metrics
EpiCollect+: linking smartphones to web applications for complex data collection projects
[version 1; peer review: 2 approved]
Peer Reviewers Daniel Lombraña González; Jason E. Stajich
PUBLISHED 20 Aug 2014
https://doi.org/10.12688/f1000research.4975.1
Editorial metrics NOT PEER REVIEWED
Biology and conservation of elasmobranchs: an introduction to the collection
[version 1; peer review: not peer reviewed]
PUBLISHED 12 Aug 2014
https://doi.org/10.12688/f1000research.4831.1
Software Tool Article metrics
FALCON: a software package for analysis of nestedness in bipartite networks
[version 1; peer review: 2 approved]
Peer Reviewers C. Patrick Doncaster; Justin R. Meyer
PUBLISHED 06 Aug 2014
https://doi.org/10.12688/f1000research.3681.2
Method Article metrics
Revised
Developing sustainable software solutions for bioinformatics by the “Butterfly” paradigm
[version 2; peer review: 2 approved]
Peer Reviewers Paul Vauterin; Wolfgang Mueller
LATEST VERSION PUBLISHED 01 Aug 2014
https://doi.org/10.12688/f1000research.4830.1
Software Tool Article metrics
Explain your data by Concept Profile Analysis Web Services
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Karin Verspoor; Naoaki Okazaki
PUBLISHED 25 Jul 2014
https://doi.org/10.12688/f1000research.3895.2
Data Note metrics
Revised
Neurosharing: large-scale data sets (spike, LFP) recorded from the hippocampal-entorhinal system in behaving rats
[version 2; peer review: 4 approved]
Peer Reviewers Yoshikazu Isomura; Shuzo Sakata; Andrew P. Maurer; James Knierim
LATEST VERSION PUBLISHED 18 Jul 2014
https://doi.org/10.12688/f1000research.4546.1
Software Tool Article metrics
Porting and using PanGIA for Cytoscape 3: challenges and solutions
[version 1; peer review: 3 approved]
Peer Reviewers Brian Kidd; Alfredo Pulvirenti; Christian Lopes
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4521.1
Software Tool Article metrics
BridgeDb app: unifying identifier mapping services for Cytoscape
[version 1; peer review: 2 approved]
Peer Reviewers Benno Schwikowski; Olivier Elemento
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4460.1
Software Tool Article metrics
enhancedGraphics: a Cytoscape app for enhanced node graphics
[version 1; peer review: 2 approved]
Peer Reviewers Lars Juhl Jensen; Piet Molenaar
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4524.1
Software Tool Article metrics
KEGGscape: a Cytoscape app for pathway data integration
[version 1; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Matthew DeJongh; Egon Willighagen; Melissa Cline
  • Funder
  • Japan Science and Technology Agency
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4536.1
Software Tool Article metrics
Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results
[version 1; peer review: 2 approved]
Peer Reviewers Nathan Salomonis; Florian Markowetz
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.2-192.v2
Software Tool Article metrics
Revised
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
[version 2; peer review: 3 approved]
Peer Reviewers Nikolaus Schultz and B. Arman Aksoy; Ghislain Bidaut; Paul T. Shannon
LATEST VERSION PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4642.1
Editorial metrics NOT PEER REVIEWED
The Cytoscape app article collection
[version 1; peer review: not peer reviewed]
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.2-288.v3
Research Article metrics
Revised
JSim, an open-source modeling system for data analysis
[version 3; peer review: 2 approved]
Peer Reviewers Steven Niederer; David Nickerson
LATEST VERSION PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4415.1
Research Article metrics
Expert interviews with science communicators: How perceptions of audience values influence science communication values and practices
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Sarah R. Davies; Holger Wormer
PUBLISHED 17 Jun 2014
https://doi.org/10.12688/f1000research.3978.2
Opinion Article metrics
Revised
Computational science: shifting the focus from tools to models
[version 2; peer review: 2 approved]
Peer Reviewers David Hestenes; Patrik Jansson and Cezar Ionescu
LATEST VERSION PUBLISHED 17 Jun 2014
https://doi.org/10.12688/f1000research.3-18.v2
Research Article metrics
Revised
Mutation extraction tools can be combined for robust recognition of genetic variants in the literature
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Philippe Thomas; Max Haeussler; Cecilia N. Arighi
LATEST VERSION PUBLISHED 10 Jun 2014
https://doi.org/10.12688/f1000research.2-20.v3
Method Article metrics
Revised
A flexible user-interface for audiovisual presentation and interactive control in neurobehavioral experiments
[version 3; peer review: 3 approved]
Peer Reviewers Bruce Cumming; Vincent Ferrera; Farrel Robinson
LATEST VERSION PUBLISHED 10 Jun 2014
961-980 of 1,017 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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