All Research Articles

Home Browse Articles
101-120 of 380 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.24074.1
Research Article metrics
Potential chimeric peptides to block the SARS-CoV-2 spike receptor-binding domain
[version 1; peer review: 2 approved, 1 approved with reservations]
Debmalya Barh, Sandeep Tiwari, Bruno Silva Andrade, Marta Giovanetti, Eduardo Almeida Costa, Ranjith Kumavath, Preetam Ghosh, Aristóteles Góes-Neto, Luiz Carlos Junior Alcantara, Vasco Azevedo
Peer Reviewers Candan Hizel; Shailendra Dwivedi; Amjad Ali
  • Funders
  • Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
  • Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro
PUBLISHED 09 Jun 2020
https://doi.org/10.12688/f1000research.24101.1
Editorial metrics NOT PEER REVIEWED
Highlights of the 3rd ISCB Africa Student Council Symposium 2019 in Ghana
[version 1; peer review: not peer reviewed]
Wisdom A. Akurugu, Albert Doughan, Abdul-Rahman Adamu Bukari, Mahtaab Hayat, Emmanuel James San, Hannah Nyarkoah Nyarko, John Mogaka, Mwangi Harrison Ndung'u, Farzana Rahman, Sayane Shome
  • Funder
  • International Society of Computational Biology
PUBLISHED 27 May 2020
https://doi.org/10.12688/f1000research.20715.2
Method Article metrics
Revised
Prediction of cell position using single-cell transcriptomic data: an iterative procedure
[version 2; peer review: 2 approved]
Andrés M. Alonso, Alejandra Carrea, Luis Diambra
Peer Reviewers Roosevelt Alves Da Silva; Pablo Meyer
LATEST VERSION PUBLISHED 09 Apr 2020
https://doi.org/10.12688/f1000research.22639.1
Research Article metrics
Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
[version 1; peer review: 2 approved, 1 approved with reservations]
Andreas Halman, Alicia Oshlack
Peer Reviewers Elizabeth A. Worthey; Jan Radvanszky and Jaroslav Budiš; Maria Anisimova
  • Funder
  • National Health and Medical Research Council
PUBLISHED 23 Mar 2020
https://doi.org/10.12688/f1000research.20873.2
Opinion Article metrics
Revised
The why, when, and how of computing in biology classrooms
[version 2; peer review: 2 approved]
April M. Wright, Rachel S. Schwartz, Jamie R. Oaks, Catherine E. Newman, Sarah P. Flanagan
Peer Reviewers Tiffany Timbers; Thomas Kluyver
  • Funders
  • University of Canterbury
  • National Institute of Food and Agriculture
  • National Institute of General Medical Sciences
  • National Science Foundation
LATEST VERSION PUBLISHED 02 Mar 2020
https://doi.org/10.12688/f1000research.21763.1
Software Tool Article metrics
vhcub: Virus-host codon usage co-adaptation analysis
[version 1; peer review: 2 approved]
Ali Mostafa Anwar, Mohamed Soudy, Radwa Mohamed
Peer Reviewers Raj Kumar Singh; Oscar Leonardo Ramírez Suárez and Adriana Patricia Corredor-Figueroa
PUBLISHED 23 Dec 2019
https://doi.org/10.12688/f1000research.21568.1
Editorial metrics NOT PEER REVIEWED
BOSC 2019, the 20th annual Bioinformatics Open Source Conference
[version 1; peer review: not peer reviewed]
Nomi L. Harris, Peter J.A. Cock, Christopher J. Fields, Bastian Greshake Tzovaras, Michael Heuer, Karsten Hokamp, Monica Munoz-Torres, Alexander Peltzer, Bastian Rieck, Heather Wiencko, Yo Yehudi
PUBLISHED 20 Dec 2019
https://doi.org/10.12688/f1000research.11622.4
Method Article metrics
Revised
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
[version 4; peer review: 2 approved]
Malgorzata Nowicka, Carsten Krieg, Helena L. Crowell, Lukas M. Weber, Felix J. Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P. Levesque, Mark D. Robinson
Peer Reviewers Aaron T. L. Lun and John C. Marioni; Greg Finak and Raphael Gottardo
  • Funders
  • Swiss National Science Foundation
  • Swiss Institute of Bioinformatics
  • University of Zurich
LATEST VERSION PUBLISHED 17 Dec 2019
https://doi.org/10.12688/f1000research.19481.1
Review metrics
Metabolic phenotyping of the human microbiome
[version 1; peer review: 2 approved]
Wiley Barton, Orla O'Sullivan, Paul D. Cotter
Peer Reviewers Robert E Brown; Jack A Gilbert
  • Funders
  • Department of Agriculture, Food and the Marine
  • Science Foundation Ireland
PUBLISHED 22 Nov 2019
https://doi.org/10.12688/f1000research.18866.2
Software Tool Article metrics
Revised
MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data
[version 2; peer review: 2 approved]
Mike W.C. Thang, Xin-Yi Chua, Gareth Price, Dominique Gorse, Matt A. Field
Peer Reviewers Saskia Hiltemann; Leo Lahti
  • Funder
  • Australian Institute of Tropical Health and Medicine
LATEST VERSION PUBLISHED 18 Oct 2019
https://doi.org/10.12688/f1000research.20136.1
Opinion Article metrics
An intrinsically disordered proteins community for ELIXIR
[version 1; peer review: 2 approved]
Norman E. Davey, M. Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Zsuzsanna Dosztanyi, Rachel Drysdale, Richard J. Edwards, Arne Elofsson, Isabella C. Felli, Toby J. Gibson, Aleksandras Gutmanas, John M. Hancock, Jen Harrow, Desmond Higgins, Cy M. Jeffries, Philippe Le Mercier, Balint Mészáros, Marco Necci, Cedric Notredame, Sandra Orchard, Christos A. Ouzounis, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Vasilis J. Promponas, Patrick Ruch, Gabriella Rustici, Pedro Romero, Sirarat Sarntivijai, Gary Saunders, Benjamin Schuler, Malvika Sharan, Denis C. Shields, Joel L. Sussman, Jonathan A. Tedds, Peter Tompa, Michael Turewicz, Jiri Vondrasek, Wim F. Vranken, Bonnie Ann Wallace, Kanin Wichapong, Silvio C. E. Tosatto
Peer Reviewers Iva Pritisanac and Julie Forman-Kay; Osman Ugur Sezerman
  • Funders
  • Vetenskapsrådet
  • BBSRC
  • European Molecular Biology Laboratory
  • Carlsberg Foundation Distinguished Fellowship
  • National Institutes of Health
  • Israel I-CORE Project
  • ELIXIR
  • Danmarks Grundforskningsfond
  • Instruct-ERIC
  • Swiss Federal Government
  • Marie Skłodowska-Curie
  • COST Action BM1405 NGP-net
  • Wellcome Trust
PUBLISHED 15 Oct 2019
https://doi.org/10.12688/f1000research.18490.3
Research Article metrics
Revised
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data
[version 3; peer review: 2 approved, 1 approved with reservations]
J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Peer Reviewers Saskia Freytag; Jimmy Tsz Hang Lee and Tallulah Andrews; Lindsay Cowell
  • Funders
  • National Resource for Network Biology
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 14 Oct 2019
https://doi.org/10.12688/f1000research.19541.3
Software Tool Article metrics
Revised
InferAMP, a python web app for copy number inference from discrete gene-level amplification signals noted in clinical tumor profiling reports
[version 3; peer review: 2 approved]
Paraic A. Kenny
Peer Reviewers Andrew C. Nelson; Oscar Krijgsman
  • Funder
  • Gundersen Medical Foundation
LATEST VERSION PUBLISHED 26 Sep 2019
https://doi.org/10.12688/f1000research.19029.2
Software Tool Article metrics
Revised
Network-based Observability and Controllability Analysis of Dynamical Systems: the NOCAD toolbox
[version 2; peer review: 2 approved]
Dániel Leitold, Ágnes Vathy-Fogarassy, János Abonyi
Peer Reviewers Gilles Didier; Arthur Montanari, Ercílio Moreira and Luis A. Aguirre
  • Funders
  • Emberi Eroforrások Minisztériuma
  • Országos Tudományos Kutatási Alapprogramok
LATEST VERSION PUBLISHED 18 Sep 2019
https://doi.org/10.12688/f1000research.18575.2
Research Article metrics
Revised
Adaptation, fitness landscape learning and fast evolution
[version 2; peer review: 2 approved]
John Reinitz, Sergey Vakulenko, Dmitri Grigoriev, Andreas Weber
Peer Reviewers Eors Szathmary; Aviv Bergman
  • Funders
  • RSF
  • Russian Ministry of Education
  • National Institutes of Health
  • Government of Russian Federation
LATEST VERSION PUBLISHED 13 Sep 2019
https://doi.org/10.12688/f1000research.18130.1
Review metrics
Shared Genetics of Psychiatric Disorders
[version 1; peer review: 2 approved]
Tova Fuller, Victor Reus
Peer Reviewers Yong-Gang Yao; Eske Derks
  • Funder
  • National Institute of Mental Health
PUBLISHED 12 Sep 2019
https://doi.org/10.12688/f1000research.17204.3
Data Note metrics
Revised
Pan-cancer repository of validated natural and cryptic mRNA splicing mutations
[version 3; peer review: 2 approved, 1 approved with reservations]
Ben C. Shirley, Eliseos J. Mucaki, Peter K. Rogan
Peer Reviewers Emanuele Buratti; Francesca D. Ciccarelli; W.W.M. Pim Pijnappel
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • CytoGnomix Inc.
  • Compute Canada
  • Canadian Foundation for Innovation
  • Canada Research Chairs
  • Shared Hierarchical Academic Research Computing Network
LATEST VERSION PUBLISHED 06 Sep 2019
https://doi.org/10.12688/f1000research.20408.1
Editorial metrics NOT PEER REVIEWED
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
[version 1; peer review: not peer reviewed]
Sayane Shome, R. Gonzalo Parra, Nazeefa Fatima, Alexander Miguel Monzon, Bart Cuypers, Yumna Moosa, Nilson Da Rocha Coimbra, Juliana Assis, Carla Giner-Delgado, Handan Melike Dönertaş, Yesid Cuesta-Astroz, Geetha Saarunya, Imane Allali, Shruti Gupta, Ambuj Srivastava, Manisha Kalsan, Catalina Valdivia, Gabriel J. Olguin-Orellana, Sofia Papadimitriou, Daniele Parisi, Nikolaj Pagh Kristensen, Leonor Rib, Marouen Ben Guebila, Eugen Bauer, Gaia Zaffaroni, Amel Bekkar, Efejiro Ashano, Lisanna Paladin, Marco Necci, Nicolás N. Moreyra, Martin Rydén, Jordan Villalobos-Solís, Nikolaos Papadopoulos, Candice Rafael, Tülay Karakulak, Yasin Kaya, Yvonne Gladbach, Sandeep Kumar Dhanda, Nikolina Šoštarić, Aishwarya Alex, Dan DeBlasio, Farzana Rahman
  • Funder
  • International Society for Computational Biology
PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.16200.2
Research Article metrics
Revised
Predicting transcription factor binding using ensemble random forest models
[version 2; peer review: 2 approved]
Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H. Schulz
Peer Reviewers Jan Grau; Gary D Stormo
  • Funder
  • Cluster of Excellence on Multimodal Computing and Interaction (DFG)
LATEST VERSION PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.18705.2
Research Article metrics
Revised
Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
[version 2; peer review: 1 approved, 2 approved with reservations]
Katharina Baum, Jagath C. Rajapakse, Francisco Azuaje
Peer Reviewers Lei Xie and Yue Qiu; Silvia Pineda San Juan; Ana Conesa and Manuel Ugidos
  • Funders
  • Fonds National de la Recherche Luxembourg
  • Joachim Herz Stiftung
LATEST VERSION PUBLISHED 27 Aug 2019
101-120 of 380 ARTICLES
Previous Next
PUBLISH YOUR RESEARCH
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
SUBMIT AN ARTICLE
See guidelines and policies.
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.