All Research Articles

101-120 of 369 ARTICLES
https://doi.org/10.12688/f1000research.18490.3
Research Article metrics
Revised
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Saskia Freytag; Jimmy Tsz Hang Lee and Tallulah Andrews; Lindsay Cowell
  • Funders
  • National Resource for Network Biology
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 14 Oct 2019
https://doi.org/10.12688/f1000research.19541.3
Software Tool Article metrics
Revised
InferAMP, a python web app for copy number inference from discrete gene-level amplification signals noted in clinical tumor profiling reports
[version 3; peer review: 2 approved]
Peer Reviewers Andrew C. Nelson; Oscar Krijgsman
  • Funder
  • Gundersen Medical Foundation
LATEST VERSION PUBLISHED 26 Sep 2019
https://doi.org/10.12688/f1000research.19029.2
Software Tool Article metrics
Revised
Network-based Observability and Controllability Analysis of Dynamical Systems: the NOCAD toolbox
[version 2; peer review: 2 approved]
Peer Reviewers Gilles Didier; Arthur Montanari, Ercílio Moreira and Luis A. Aguirre
  • Funders
  • Emberi Eroforrások Minisztériuma
  • Országos Tudományos Kutatási Alapprogramok
LATEST VERSION PUBLISHED 18 Sep 2019
https://doi.org/10.12688/f1000research.18575.2
Research Article metrics
Revised
Adaptation, fitness landscape learning and fast evolution
[version 2; peer review: 2 approved]
Peer Reviewers Eors Szathmary; Aviv Bergman
  • Funders
  • RSF
  • Russian Ministry of Education
  • National Institutes of Health
  • Government of Russian Federation
LATEST VERSION PUBLISHED 13 Sep 2019
https://doi.org/10.12688/f1000research.18130.1
Review metrics
Shared Genetics of Psychiatric Disorders
[version 1; peer review: 2 approved]
Peer Reviewers Yong-Gang Yao; Eske Derks
  • Funder
  • National Institute of Mental Health
PUBLISHED 12 Sep 2019
https://doi.org/10.12688/f1000research.17204.3
Data Note metrics
Revised
Pan-cancer repository of validated natural and cryptic mRNA splicing mutations
[version 3; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Emanuele Buratti; Francesca D. Ciccarelli; W.W.M. Pim Pijnappel
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • CytoGnomix Inc.
  • Compute Canada
  • Canadian Foundation for Innovation
  • Canada Research Chairs
  • Shared Hierarchical Academic Research Computing Network
LATEST VERSION PUBLISHED 06 Sep 2019
https://doi.org/10.12688/f1000research.20408.1
Editorial metrics NOT PEER REVIEWED
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.16200.2
Research Article metrics
Revised
Predicting transcription factor binding using ensemble random forest models
[version 2; peer review: 2 approved]
Peer Reviewers Jan Grau; Gary D Stormo
  • Funder
  • Cluster of Excellence on Multimodal Computing and Interaction (DFG)
LATEST VERSION PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.18705.2
Research Article metrics
Revised
Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
[version 2; peer review: 1 approved, 2 approved with reservations]
Peer Reviewers Lei Xie and Yue Qiu; Silvia Pineda San Juan; Ana Conesa and Manuel Ugidos
  • Funders
  • Fonds National de la Recherche Luxembourg
  • Joachim Herz Stiftung
LATEST VERSION PUBLISHED 27 Aug 2019
https://doi.org/10.12688/f1000research.20233.1
Software Tool Article metrics
A Sequence Distance Graph framework for genome assembly and analysis
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers Erik Garrison; Eric T. Dawson; Max Alekseyev and Pavel Avdeyev
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 23 Aug 2019
https://doi.org/10.12688/f1000research.18491.1
Review metrics
Polygenic risk scores in psychiatry: Will they be useful for clinicians?
[version 1; peer review: 4 approved]
Peer Reviewers Joanna M. Biernacka; Jeremy Hall; Ingrid Melle; Cathryn M. Lewis
  • Funders
  • National Institute of Mental Health
  • Janette Mary O'Neil Research Fellowship
  • Australian National Health and Medical Research Council
PUBLISHED 31 Jul 2019
https://doi.org/10.12688/f1000research.19320.1
Opinion Article metrics
Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis
[version 1; peer review: 2 approved]
Peer Reviewers Richard Fitzpatrick and Melanie I. Stefan; Michael Springer
  • Funders
  • Natural Sciences and Engineering Research Council
  • BC Children’s Hospital Research Institute
PUBLISHED 30 Jul 2019
https://doi.org/10.12688/f1000research.19140.1
Software Tool Article metrics
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich’s ataxia, and other rare iron-related diseases
[version 1; peer review: 2 approved]
Peer Reviewers Karl E Anderson; Robert J. Desnick
  • Funders
  • American Cancer Society
  • WHC
  • U.S. National Library of Medicine
  • University of South Florida
  • National Science Foundation
PUBLISHED 19 Jul 2019
https://doi.org/10.12688/f1000research.18674.2
Software Tool Article metrics
Revised
CGAT-core: a python framework for building scalable, reproducible computational biology workflows
[version 2; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Devon P. Ryan; Alexander Peltzer
  • Funder
  • Medical Research Council
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.19592.1
Software Tool Article metrics
Visualization of drug target interactions in the contexts of pathways and networks with ReactomeFIViz
[version 1; peer review: 3 approved]
Peer Reviewers Fuhai Li; Aritro Nath; Tero Aittokallio and Ziaurrehman Tanoli
  • Funder
  • National Institutes of Health
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.18214.2
Software Tool Article metrics
Revised
Assessing drug target suitability using TargetMine
[version 2; peer review: 2 approved]
Peer Reviewers Rachel Lyne; Anne Hersey
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.19221.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Innovator Award recognizes William Stafford Noble
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19220.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Overton Prize: Christophe Dessimoz
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19219.1
Editorial metrics NOT PEER REVIEWED
Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19218.1
Editorial metrics NOT PEER REVIEWED
2019 Outstanding Contributions to ISCB awarded to Barb Bryant
[version 1; peer review: not peer reviewed]
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
101-120 of 369 ARTICLES
Articles
We publish a wide range of article types in science, engineering, medicine, social sciences and humanities, with no editorial biases.
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