EMBL-EBI

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 in 
https://doi.org/10.12688/f1000research.7118.2
Software Tool Article metrics
Revised
DREAMTools: a Python package for scoring collaborative challenges
[version 2; peer review: 1 approved, 2 approved with reservations]
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Alberto de la Fuente, Mehmet Gönen, Steven M. Hill, Bruce Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
Peer Reviewers Konrad Hinsen; Rafael Najmanovich; Nicola J. Mulder
LATEST VERSION PUBLISHED 08 Apr 2016
https://doi.org/10.12688/f1000research.7911.1
Research Article metrics
Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources
[version 1; peer review: 3 approved]
David Bousfield, Johanna McEntyre, Sameer Velankar, George Papadatos, Alex Bateman, Guy Cochrane, Jee-Hyub Kim, Florian Graef, Vid Vartak, Blaise Alako, Niklas Blomberg
Peer Reviewers Mark Parsons; Timothy W. Clark; Ben Johnson
PUBLISHED 11 Feb 2016
https://doi.org/10.12688/f1000research.7764.1
Editorial metrics NOT PEER REVIEWED
The EMBL-EBI channel
[version 1; peer review: not peer reviewed]
Jo McEntyre, Ewan Birney
PUBLISHED 12 Jan 2016
https://doi.org/10.12688/f1000research.6032.1
Software Tool Article metrics
FORGE: A tool to discover cell specific enrichments of GWAS associated SNPs in regulatory regions
[version 1; peer review: 2 approved with reservations]
Ian Dunham, Eugene Kulesha, Valentina Iotchkova, Sandro Morganella, Ewan Birney
Peer Reviewers Colin A. Semple; Joanne Knight
PUBLISHED 22 Jan 2015
https://doi.org/10.12688/f1000research.5499.1
Software Tool Article metrics
Visualisation of BioPAX Networks using BioLayout Express3D
[version 1; peer review: 2 approved]
Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Peer Reviewers Gary D Bader; Jianguo Xia
PUBLISHED 20 Oct 2014
https://doi.org/10.12688/f1000research.2-192.v2
Software Tool Article metrics
Revised
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
[version 2; peer review: 3 approved]
Emanuel Gonçalves, Franz Mirlach, Julio Saez-Rodriguez
Peer Reviewers Nikolaus Schultz and B. Arman Aksoy; Ghislain Bidaut; Paul T. Shannon
LATEST VERSION PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.3-47.v2
Software Tool Article metrics
Revised
FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences
[version 2; peer review: 2 approved]
Leyla Garcia, Guy Yachdav, Maria-Jesus Martin
Peer Reviewers Jim Procter; Andreas Prlic
LATEST VERSION PUBLISHED 09 Apr 2014
https://doi.org/10.12688/f1000research.3-52.v1
Web Tool metrics
Sequence, a BioJS component for visualising sequences
[version 1; peer review: 2 approved]
John Gomez, Rafael Jimenez
Peer Reviewers Christoph Gille; Jeremy Goecks
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-49.v1
Web Tool metrics
treeWidget: a BioJS component to visualise phylogenetic trees
[version 1; peer review: 1 approved, 1 approved with reservations]
Fabian Schreiber
Peer Reviewers Jaime Huerta-Cepas; Stephen A. Smith
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-44.v1
Software Tool Article metrics
PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers
[version 1; peer review: 2 approved]
Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Peer Reviewers Christine Orengo; Frederic de Lamotte and Jean-François Dufayard
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-43.v1
Software Tool Article metrics
KEGGViewer, a BioJS component to visualize KEGG Pathways
[version 1; peer review: 2 approved]
Jose M. Villaveces, Rafael C. Jimenez, Bianca H. Habermann
Peer Reviewers Hedi Peterson and Priit Adler; Alexander Pico
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.2-154.v2
Research Article metrics
The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold
[version 2; peer review: 2 approved]
Daniel J Rigden, Qingping Xu, Yuanyuan Chang, Ruth Y Eberhardt, Robert D Finn, Neil D Rawlings
Peer Reviewers Patricia C Weber; Xiayang Qiu
LATEST VERSION PUBLISHED 23 Aug 2013
https://doi.org/10.12688/f1000research.2-117.v2
Web Tool metrics
IsoCleft Finder – a web-based tool for the detection and analysis of protein binding-site geometric and chemical similarities
[version 2; peer review: 2 approved, 1 approved with reservations]
Natalja Kurbatova, Matthieu Chartier, María Inés Zylber, Rafael Najmanovich
Peer Reviewers Andrew J Bordner; Andras Fiser; John P. Overington
LATEST VERSION PUBLISHED 02 May 2013
41-53 of 53 ARTICLES
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