Container Virtualization in Bioinformatics

Container Virtualization in Bioinformatics

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1-8 of 8 ARTICLES
 in 
https://doi.org/10.12688/f1000research.11389.2
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Revised
PubRunner: A light-weight framework for updating text mining results
[version 2; peer review: 1 approved, 2 approved with reservations]
Kishore R. Anekalla, J.P. Courneya, Nicolas Fiorini, Jake Lever, Michael Muchow, Ben Busby
Peer Reviewers Jin-Dong Kim; Fabio Rinaldi; Julien Gobeill
  • Funders
  • National Institutes of Health
  • Vanier Canada
LATEST VERSION PUBLISHED 13 Oct 2017
https://doi.org/10.12688/f1000research.11355.2
Software Tool Article metrics
Revised
Arkas: Rapid reproducible RNAseq analysis
[version 2; peer review: 2 approved]
Anthony R. Colombo, Timothy J. Triche Jr, Giridharan Ramsingh
Peer Reviewers Harold Pimentel; Ted Abel and Marie Gaine
  • Funders
  • Stop Cancer
  • Illumina
  • Tower Cancer Research Foundation
  • Leukemia and Lymphoma Society
LATEST VERSION PUBLISHED 21 Jun 2017
https://doi.org/10.12688/f1000research.10137.1
Software Tool Article metrics
The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows
[version 1; peer review: 2 approved]
Brian D. O'Connor, Denis Yuen, Vincent Chung, Andrew G. Duncan, Xiang Kun Liu, Janice Patricia, Benedict Paten, Lincoln Stein, Vincent Ferretti
Peer Reviewers Gaurav Kaushik; Heinz Stockinger
PUBLISHED 18 Jan 2017
https://doi.org/10.12688/f1000research.8935.3
Software Tool Article metrics
Revised
Bringing your tools to CyVerse Discovery Environment using Docker
[version 3; peer review: 3 approved]
Upendra Kumar Devisetty, Kathleen Kennedy, Paul Sarando, Nirav Merchant, Eric Lyons
Peer Reviewers Steven B Cannon; Thomas S. B. Schmidt; Robert Cannon
LATEST VERSION PUBLISHED 05 Dec 2016
https://doi.org/10.12688/f1000research.9110.1
Method Article metrics
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
[version 1; peer review: 3 approved]
Zichen Wang, Avi Ma'ayan
Peer Reviewers Ravi K. Madduri; Apostolos Zaravinos; Fredrik Pettersson and Sarbashis Das
PUBLISHED 05 Jul 2016
https://doi.org/10.12688/f1000research.7536.1
Software Tool Article metrics
BioShaDock: a community driven bioinformatics shared Docker-based tools registry
[version 1; peer review: 2 approved]
François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin
Peer Reviewers Rodrigo Lopez; Björn A. Grüning
PUBLISHED 14 Dec 2015
https://doi.org/10.12688/f1000research.7104.1
Software Tool Article metrics
NGSeasy: a next generation sequencing pipeline in Docker containers
[version 1; peer review: 3 approved with reservations]
Amos A Folarin, Richard JB Dobson, Stephen J Newhouse
Peer Reviewers Fabien Campagne; Brad Chapman; Michael Barton
PUBLISHED 05 Oct 2015
https://doi.org/10.12688/f1000research.6238.2
Software Tool Article metrics
Revised
Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies
[version 2; peer review: 1 approved, 2 approved with reservations]
Bjørn Fjukstad, Karina Standahl Olsen, Mie Jareid, Eiliv Lund, Lars Ailo Bongo
Peer Reviewers Paul Klemm; Zhenjun Hu; Lilit Nersisyan
LATEST VERSION PUBLISHED 16 Jun 2015
1-8 of 8 ARTICLES
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