NEUBIAS - the Bioimage Analysts Network

NEUBIAS - the Bioimage Analysts Network

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21-29 of 29 ARTICLES
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https://doi.org/10.12688/f1000research.51916.1
Software Tool Article metrics
CytoBrowser: a browser-based collaborative annotation platform for whole slide images
[version 1; peer review: 1 approved with reservations, 1 not approved]
Christopher Rydell, Joakim Lindblad
Peer Reviewers Simon Nørrelykke; Peter Bankhead
  • Funder
  • Sweden’s Innovation Agency, VINNOVA
PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.50798.1
Software Tool Article metrics
Interactive biomedical segmentation tool powered by deep learning and ImJoy
[version 1; peer review: 1 approved, 1 approved with reservations]
Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg
Peer Reviewers Jean-Yves Tinevez and Dmitry Ershov; Jan Funke
  • Funders
  • Knut and Alice Wallenberg Foundation
  • Swedish Research Council
  • LST Platform at KTH Royal Institute of Technology
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.27140.2
Software Tool Article metrics
Revised
Effective image visualization for publications – a workflow using open access tools and concepts
[version 2; peer review: 2 approved]
Christopher Schmied, Helena Klara Jambor
Peer Reviewers Guillaume Jacquemet; Georgina Fletcher and David Barry
  • Funder
  • Deutsche Krebshilfe
LATEST VERSION PUBLISHED 18 Feb 2021
https://doi.org/10.12688/f1000research.26872.2
Software Tool Article metrics
Revised
Fiji plugins for qualitative image annotations: routine analysis and application to image classification
[version 2; peer review: 2 approved, 1 approved with reservations]
Laurent S. V. Thomas, Franz Schaefer, Jochen Gehrig
Peer Reviewers Jan Eglinger; Christian Tischer and Aliaksandr Halavatyi; Elisabet Teixido
  • Funder
  • Horizon 2020
LATEST VERSION PUBLISHED 12 Feb 2021
https://doi.org/10.12688/f1000research.27112.2
Software Tool Article metrics
Revised
MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy
[version 2; peer review: 2 approved]
Sébastien Tosi, Lídia Bardia, Maria Jose Barallobre, Arrate Muñoz-Barrutia, María Luisa Soto-Montenegro, Julien Colombelli
Peer Reviewers Stephan Preibisch; Francesco Pampaloni
  • Funders
  • Instituto de Salud Carlos III
  • Ministerio de Ciencia, Innovación y Universidades
  • Ministerio de Economía y Competitividad
  • European Regional Development Fund
LATEST VERSION PUBLISHED 04 Feb 2021
https://doi.org/10.12688/f1000research.27171.1
Software Tool Article metrics
Bleach correction ImageJ plugin for compensating the photobleaching of time-lapse sequences
[version 1; peer review: 4 approved, 1 approved with reservations]
Kota Miura
Peer Reviewers Fabrice P Cordelières; Arianne Bercowsky Rama; Thomas Pengo; Anna H. Klemm; Bram van den Broek
PUBLISHED 21 Dec 2020
https://doi.org/10.12688/f1000research.27019.2
Software Tool Article metrics
Revised
Automated cell tracking using StarDist and TrackMate
[version 2; peer review: 3 approved]
Elnaz Fazeli, Nathan H. Roy, Gautier Follain, Romain F. Laine, Lucas von Chamier, Pekka E. Hänninen, John E. Eriksson, Jean-Yves Tinevez, Guillaume Jacquemet
Peer Reviewers Lachlan W. Whitehead; Ignacio Arganda-Carreras; Vinay Swaminathan
  • Funders
  • Academy of Finland
  • National Cancer Center Finland
  • American Institute for Cancer Research
  • Sigrid Juselius Foundation
  • Medical Research Council
  • Åbo Akademi University Research Foundation
  • National Institutes of Health
  • Cancer Research Institute
LATEST VERSION PUBLISHED 21 Dec 2020
https://doi.org/10.12688/f1000research.27179.1
Software Tool Article metrics
Semi-automated analysis of dot blots using ImageJ/Fiji
[version 1; peer review: 2 approved with reservations]
Anna H. Klemm
Peer Reviewers Christopher Schmied; Bram van den Broek
  • Funders
  • Ludwig Maximilian University of Munich
  • SciLifeLab
PUBLISHED 01 Dec 2020
https://doi.org/10.12688/f1000research.24759.1
Editorial metrics NOT PEER REVIEWED
The NEUBIAS Gateway: a hub for bioimage analysis methods and materials
[version 1; peer review: not peer reviewed]
Beth A. Cimini, Simon F Nørrelykke, Marion Louveaux, Nataša Sladoje, Perrine Paul-Gilloteaux, Julien Colombelli, Kota Miura
  • Funder
  • European Cooperation in Science and Technology
PUBLISHED 16 Jun 2020
21-29 of 29 ARTICLES
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