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https://doi.org/10.12688/f1000research.19194.1
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The herpes simplex virus 1 Us3 kinase is involved in assembly of membranes needed for viral envelopment and in distribution of glycoprotein K
[version 1; peer review: 1 approved, 2 approved with reservations]
Kurt Tobler, Claudia Senn, Elisabeth M. Schraner, Mathias Ackermann, Cornel Fraefel, Peter Wild
Peer Reviewers Konstantin G. Kousoulas; Antonio Alcamí; Benedikt Kaufer
  • Funder
  • Universität Zürich
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.18466.1
Review metrics
Antisense-mediated splice intervention to treat human disease: the odyssey continues
[version 1; peer review: 3 approved]
Ianthe Pitout, Loren L. Flynn, Steve D. Wilton, Sue Fletcher
Peer Reviewers Cy Stein; Satoshi Obika; Michelle Hastings
PUBLISHED 22 May 2019
https://doi.org/10.12688/f1000research.13580.3
Method Article metrics
Revised
A host subtraction database for virus discovery in human cell line sequencing data
[version 3; peer review: 2 approved]
Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Peer Reviewers Caroline C. Friedel; Ravi Sachidanandam
  • Funder
  • U.S. Department of Homeland Security
LATEST VERSION PUBLISHED 21 May 2019
https://doi.org/10.12688/f1000research.17573.1
Review metrics
Recent advances in marburgvirus research
[version 1; peer review: 3 approved]
Judith Olejnik, Elke Mühlberger, Adam J. Hume
Peer Reviewers Ilhem Messaoudi; Chad E Mire; M. Javad Aman
  • Funder
  • National Institute of Allergy and Infectious Diseases
PUBLISHED 21 May 2019
https://doi.org/10.12688/f1000research.15828.3
Research Article metrics
Revised
Genomic architecture differences at the HTT locus associated with symptomatic and pre-symptomatic cases of Huntington’s disease in a pilot study.
[version 3; peer review: 1 approved with reservations, 1 not approved]
Matthew Salter, Ryan Powell, Jennifer Back, Francis Grand, Christina Koutsothanasi, Jayne Green, Ewan Hunter, Aroul Ramadass, Jurjen Westra, Alexandre Akoulitchev
Peer Reviewers Willeke M.C. van Roon; Mónica Bañez-Coronel
  • Funder
  • Oxford BioDynamics, Plc
LATEST VERSION PUBLISHED 13 May 2019
https://doi.org/10.12688/f1000research.13522.2
Research Note metrics
Revised
Purine-rich low complexity regions are potential RNA binding hubs in the human genome
[version 2; peer review: 3 approved]
Ivan Antonov, Yulia A. Medvedeva
Peer Reviewers Ingrid Grummt; Andrey A. Mironov; Hao Zhu
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 09 May 2019
https://doi.org/10.12688/f1000research.18966.1
Software Tool Article metrics
Optimized functional annotation of ChIP-seq data
[version 1; peer review: 3 approved with reservations]
Bohdan B. Khomtchouk, William C. Koehler, Derek J. Van Booven, Claes Wahlestedt
Peer Reviewers Vincent J. Carey; Ruslan I. Sadreyev; Michael Lawrence
  • Funders
  • American Heart Association
  • National Institutes of Health
  • Army Research Office
PUBLISHED 02 May 2019
https://doi.org/10.12688/f1000research.17956.1
Review metrics
Detection and analysis of RNA methylation
[version 1; peer review: 2 approved]
Nigel P. Mongan, Richard D. Emes, Nathan Archer
Peer Reviewers Thomas Preiss; Marco Biggiogera
  • Funder
  • University of Nottingham
PUBLISHED 26 Apr 2019
https://doi.org/10.12688/f1000research.17954.1
Method Article metrics
Two novel strategies to assess in vivo meiotic protein expression in Arabidopsis thaliana
[version 1; peer review: 3 approved with reservations]
Niels van Tol, Martijn Rolloos, Paul J.J. Hooykaas, Bert J. van der Zaal
Peer Reviewers Christophe Lambing; Christine Mézard and Laurence Cromer; Monica Pradillo
  • Funder
  • Stichting voor de Technische Wetenschappen
PUBLISHED 24 Apr 2019
https://doi.org/10.12688/f1000research.18676.1
Software Tool Article metrics
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
[version 1; peer review: 2 approved]
Saket Choudhary
Peer Reviewers Simon Andrews; Ryan K. Dale
PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.18458.2
Software Tool Article metrics
Revised
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
[version 2; peer review: 2 approved]
Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Peer Reviewers Marta Szachniuk; Jerome Waldispühl and Roman Sarrazin-Gendron
  • Funder
  • Austrian Science Fund
LATEST VERSION PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.17865.2
Research Note metrics
Revised
The study of protein recruitment to laser-induced DNA lesions can be distorted by photoconversion of the DNA binding dye Hoechst
[version 2; peer review: 2 approved, 1 approved with reservations]
Verena Hurst, Susan M. Gasser
Peer Reviewers Vincent Dion; Sophie E. Polo and Anna Fortuny; Jerzy Dobrucki
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Novartis
LATEST VERSION PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.17145.2
Method Article metrics
Revised
False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment errors
[version 2; peer review: 3 approved]
Ashis Saha, Alexis Battle
Peer Reviewers Michael I. Love; Rob Patro; Aaron R. Quinlan
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 08 Apr 2019
https://doi.org/10.12688/f1000research.17363.2
Research Article metrics
Revised
Transcription factor binding site clusters identify target genes with similar tissue-wide expression and buffer against mutations
[version 2; peer review: 2 approved]
Ruipeng Lu, Peter K. Rogan
Peer Reviewers Daphne Ezer; Nicolae Radu Zabet
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ontario Centres of Excellence
  • Cytognomix Inc.
  • Shared Hierarchical Academic Research Computing Network
  • Southern Ontario Smart Computing Innovation
  • Western University
  • Compute Canada
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 08 Apr 2019
https://doi.org/10.12688/f1000research.17082.2
Research Article metrics
Revised
Correction of gene model annotations improves isoform abundance estimates: the example of ketohexokinase (Khk)
[version 2; peer review: 3 approved]
Christophe D. Chabbert, Tanja Eberhart, Ilaria Guccini, Wilhelm Krek, Werner J. Kovacs
Peer Reviewers Patrick K. Kimes; Stephen N Floor and Luisa Mayumi Arake de Tacca; Magnus Rattray
  • Funder
  • Dr. Walter and Edith Fischli
LATEST VERSION PUBLISHED 03 Apr 2019
https://doi.org/10.12688/f1000research.16402.1
Review metrics
Pore timing: the evolutionary origins of the nucleus and nuclear pore complex
[version 1; peer review: 3 approved]
Mark C. Field, Michael P. Rout
Peer Reviewers C. Patrick Lusk; Liesbeth Veenhoff; Tokuko Haraguchi
  • Funders
  • Medical Research Council
  • The Wellcome Trust
  • National Institutes of Health
PUBLISHED 03 Apr 2019
https://doi.org/10.12688/f1000research.17358.1
Review metrics
New insights emerge as antibody repertoire diversification meets chromosome conformation
[version 1; peer review: 3 approved]
Amy L. Kenter, Ann J. Feeney
Peer Reviewers Craig H Bassing; Harry W Schroeder; Yehudit Bergman
  • Funder
  • NIH
PUBLISHED 28 Mar 2019
https://doi.org/10.12688/f1000research.18435.1
Research Article metrics
Interaction of N-3-oxododecanoyl homoserine lactone with transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from molecular docking and dynamics simulations
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Hovakim Grabski, Lernik Hunanyan, Susanna Tiratsuyan, Hrachik Vardapetyan
Peer Reviewers Jon Paczkowski; Faizul Azam; Kapil Dave
  • Funder
  • Russian-Armenian University
PUBLISHED 22 Mar 2019
https://doi.org/10.12688/f1000research.18325.1
Research Article metrics
First draft genome assembly and identification of SNPs from hilsa shad (Tenualosa ilisha) of the Bay of Bengal
[version 1; peer review: 1 approved, 2 approved with reservations]
Md. Bazlur Rahman Mollah, Mohd Golam Quader Khan, Md Shahidul Islam, Md Samsul Alam
Peer Reviewers Joel A. Malek; Yuzine B. Esa; Shotaro Hirase
PUBLISHED 22 Mar 2019
https://doi.org/10.12688/f1000research.17084.1
Review metrics
The Application of Omics Technologies to Study Axon Regeneration and CNS Repair
[version 1; peer review: 3 approved]
Andrea Tedeschi, Phillip G Popovich
Peer Reviewers Melissa R Andrews; Shuxin Li; Simone Di Giovanni
  • Funders
  • Marina Romoli Onlus Association
  • Ray W. Poppleton Endowment
  • The Ohio Sate University Discovery Themes Initiative - Chronic Brain Injury
  • National Institutes of Health
  • Craig H. Neilsen Foundation
PUBLISHED 20 Mar 2019
201-220 of 636 ARTICLES
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