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https://doi.org/10.12688/f1000research.13807.2
Research Note metrics
Revised
Mitochondrial genomes of Anopheles arabiensis, An. gambiae and An. coluzzii show no clear species division
[version 2; peer review: 2 approved]
Mark J. Hanemaaijer, Parker D. Houston, Travis C. Collier, Laura C. Norris, Abdrahamane Fofana, Gregory C. Lanzaro, Anthony J. Cornel, Yoosook Lee
Peer Reviewers Beniamino Caputo and Verena Pichler; Maria Anice Mureb Sallum
  • Funder
  • University of California Irvine Malaria Initiative
LATEST VERSION PUBLISHED 15 Mar 2019
https://doi.org/10.12688/f1000research.16890.1
Research Article metrics
Association between +45T>G adiponectin polymorphism gene and type 2 diabetes mellitus and metabolic syndrome in a Venezuelan population
[version 1; peer review: 2 approved, 1 approved with reservations]
María Patricia Sánchez, Carem Prieto, Endrina Mujica, Kendry Vergara, Enifer Valencia, Eudymar Villalobos, Mayerlim Medina, Michael Parra, Rosanna D'Addosio, Kyle Hoedebecke, Johel E. Rodríguez, Valmore Bermudez
Peer Reviewers Eman T Mehanna; Na Zhu; Tayebeh Pourmotabbed
  • Funder
  • La Universidad del Zulia
PUBLISHED 14 Mar 2019
https://doi.org/10.12688/f1000research.18476.1
Research Note metrics
Mutations in Caenorhabditis elegans actin, which are equivalent to human cardiomyopathy mutations, cause abnormal actin aggregation in nematode striated muscle
[version 1; peer review: 1 approved, 3 approved with reservations]
Yuriko Hayashi, Kanako Ono, Shoichiro Ono
Peer Reviewers Michael Glotzer; Amy Shaub Maddox; James R. Bamburg and Marcello Pignataro; Christophe Ampe
  • Funder
  • National Institutes of Health
PUBLISHED 12 Mar 2019
https://doi.org/10.12688/f1000research.16715.3
Research Article metrics
Revised
Density artefacts at interfaces caused by multiple time-step effects in molecular dynamics simulations
[version 3; peer review: 2 approved]
Dominik Sidler, Marc Lehner, Simon Frasch, Michael Cristófol-Clough, Sereina Riniker
Peer Reviewers Bojan Zagrovic and Daniel Braun; Nico. F. A. van der Vegt
  • Funders
  • Eidgenössische Technische Hochschule Zürich
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 08 Mar 2019
https://doi.org/10.12688/f1000research.17916.1
Method Article metrics
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
[version 1; peer review: 1 approved, 2 approved with reservations]
Kimon Froussios, Kira Mourão, Gordon Simpson, Geoffrey J. Barton, Nicholas Schurch
Peer Reviewers Sophie Shaw; James P. B. Lloyd; Michael I. Love
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 24 Feb 2019
https://doi.org/10.12688/f1000research.17802.1
Research Article metrics
Nuclear envelope impairment is facilitated by the herpes simplex virus 1 Us3 kinase
[version 1; peer review: 2 approved]
Peter Wild, Sabine Leisinger, Anna Paula de Oliveira, Jana Doehner, Elisabeth M. Schraner, Cornel Fraevel, Mathias Ackermann, Andres Kaech
Peer Reviewers Haidong Gu; Maria Kalamvoki
  • Funder
  • Universität Zürich
PUBLISHED 18 Feb 2019
https://doi.org/10.12688/f1000research.17165.2
Research Article metrics
Revised
Nrf2-Mediated Antioxidant Activity of the inner bark extracts obtained from Tabebuia rosea (Bertol) DC and Tabebuia chrysantha (JACQ) G. Nicholson.
[version 2; peer review: 2 approved]
Sandra C. Garzón-Castaño, Iván A. Lopera-Castrillón, Francisco J. Jiménez-González, Fernando Siller-López, Luz A. Veloza, Juan Carlos Sepúlveda-Arias
Peer Reviewers Jaime Martin‐Franco; Silvia Quesada
  • Funders
  • Sistema General de Regalías de Colombia
  • Fundación Universitaria Autónoma de las Américas
  • Fondo Nacional de Ciencia Tecnología e Innovación
  • Universidad Tecnológica de Pereira
LATEST VERSION PUBLISHED 12 Feb 2019
https://doi.org/10.12688/f1000research.15707.2
Antibody Validation Article metrics
Revised
Comparative study of commercially available and homemade anti-VAMP7 antibodies using CRISPR/Cas9-depleted HeLa cells and VAMP7 knockout mice
[version 2; peer review: 2 approved]
Agathe Verraes, Beatrice Cholley, Thierry Galli, Sebastien Nola
Peer Reviewers Alison H. Banham; Marc G. Coppolino and Olivia Grafinger
  • Funders
  • Agence Nationale de la Recherche
  • Association Robert Debré
  • École des Neurosciences de Paris
  • Fondation pour la Recherche Médicale
  • AFM-Téléthon
  • Fondation Bettencourt Schueller
LATEST VERSION PUBLISHED 07 Feb 2019
https://doi.org/10.12688/f1000research.16877.1
Review metrics
Chain reaction: LINC complexes and nuclear positioning
[version 1; peer review: 3 approved]
Brian Burke
Peer Reviewers Didier Hodzic; Wolfram Antonin; Daniel A Starr
  • Funder
  • National Medical Research Council, Singapore
PUBLISHED 31 Jan 2019
https://doi.org/10.12688/f1000research.16903.1
Review metrics
Recent advances in proximity-based labeling methods for interactome mapping
[version 1; peer review: 2 approved]
Laura Trinkle-Mulcahy
Peer Reviewers Arnaud Poterszman; Francois-Michel Boisvert
  • Funder
  • NSERC Discovery Grant-funded project
PUBLISHED 31 Jan 2019
https://doi.org/10.12688/f1000research.17801.1
Review metrics
The role of sclerostin and dickkopf-1 in oral tissues – A review from the perspective of the dental disciplines
[version 1; peer review: 2 approved]
Mohammad Samiei, Klara Janjić, Barbara Cvikl, Andreas Moritz, Hermann Agis
Peer Reviewers Francisco Javier Rodríguez-Lozano; Qiming Jin
  • Funder
  • European Society of Endodonology
PUBLISHED 30 Jan 2019
https://doi.org/10.12688/f1000research.17447.1
Research Article metrics
Broad-spectrum capture of clinical pathogens using engineered Fc-mannose-binding lectin enhanced by antibiotic treatment
[version 1; peer review: 2 approved]
Benjamin T. Seiler, Mark Cartwright, Alexandre L. M. Dinis, Shannon Duffy, Patrick Lombardo, David Cartwright, Elana H. Super, Jacqueline Lanzaro, Kristen Dugas, Michael Super, Donald E. Ingber
Peer Reviewers Damon Eisen; Anna Swierzko
  • Funders
  • Defense Advanced Research Projects Agency
  • Harvard University
  • Gates Foundation
PUBLISHED 25 Jan 2019
https://doi.org/10.12688/f1000research.17351.1
Research Article metrics
Robust and efficient identification of biomarkers from RNA-Seq data using median control chart
[version 1; peer review: 1 approved with reservations, 1 not approved]
Md Shahjaman, Habiba Akter, Md. Mamunur Rashid, Md. Ibnul Asifuzzaman, Md. Bipul Hossen, Md. Rezanur Rahman
Peer Reviewers Lei Li; Jun Li
PUBLISHED 03 Jan 2019
https://doi.org/10.12688/f1000research.16255.2
Research Article metrics
Revised
Functional proteomic profiling reveals KLK13 and TMPRSS11D as active proteases in the lower female reproductive tract
[version 2; peer review: 2 approved]
Carla M.J. Muytjens, Yijing Yu, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Céline Deraison
LATEST VERSION PUBLISHED 31 Dec 2018
https://doi.org/10.12688/f1000research.9005.3
Software Tool Article metrics
Revised
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
[version 3; peer review: 3 approved]
Charity W. Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon K. Smyth, Matthew E. Ritchie
Peer Reviewers James W. MacDonald; Maria A. Doyle; Jovana Maksimovic
  • Funders
  • Australian Government NHMRC IRIISS
  • State Government Operational Infrastructure Support
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 28 Dec 2018
https://doi.org/10.12688/f1000research.16106.1
Review metrics
Making gene editing a therapeutic reality
[version 1; peer review: 2 approved]
Irina M. Conboy, Niren Murthy, Jessy Etienne, Zachery Robinson
Peer Reviewers Bé Wieringa; Michael Rudnicki
  • Funder
  • National Institutes of Health
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.15274.1
Review metrics
Recent advances in functional genome analysis
[version 1; peer review: 2 approved]
Roderic Guigo, Michiel de Hoon
Peer Reviewers Feng Zhang; Kerstin Lindblad-Toh
  • Funder
  • Program “Salvador de Madariaga”, Spanish Ministry of Education, Culture and Sports.
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.15935.1
Review metrics
Out of sight, out of mind? Germ cells and the potential impacts of epigenomic drugs
[version 1; peer review: 3 approved]
Ellen G. Jarred, Heidi Bildsoe, Patrick S. Western
Peer Reviewers David Brocks; Marisa Bartolomei; Douglas T Carrell
  • Funder
  • National Health and Medical Research Council
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.16755.1
Review metrics
Dissecting diffuse large B-cell lymphomas of the “not otherwise specified” type: the impact of molecular techniques
[version 1; peer review: 2 approved]
Stefano A Pileri, Enrico Derenzini, Federica Melle, Giovanna Motta, Angelica Calleri, Pierluigi Antoniotti, Virginia Maltoni, Sebastiano Spagnolo, Stefano Fiori, Valentina Tabanelli, Marco Fabbri
Peer Reviewers Ken H Young; David M Aboulafia
  • Funder
  • Italian Association for Cancer Research (AIRC)
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.16659.2
Method Article metrics
Revised
Embryonic zebrafish xenograft assay of human cancer metastasis
[version 2; peer review: 2 approved]
David Hill, Lanpeng Chen, Ewe Snaar-Jagalska, Bill Chaudhry
Peer Reviewers Adam Hurlstone; Yi Feng
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • KWF Kankerbestrijding
LATEST VERSION PUBLISHED 20 Dec 2018
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