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https://doi.org/10.12688/f1000research.17351.1
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Robust and efficient identification of biomarkers from RNA-Seq data using median control chart
[version 1; peer review: 1 approved with reservations, 1 not approved]
Md Shahjaman, Habiba Akter, Md. Mamunur Rashid, Md. Ibnul Asifuzzaman, Md. Bipul Hossen, Md. Rezanur Rahman
Peer Reviewers Lei Li; Jun Li
PUBLISHED 03 Jan 2019
https://doi.org/10.12688/f1000research.16255.2
Research Article metrics
Revised
Functional proteomic profiling reveals KLK13 and TMPRSS11D as active proteases in the lower female reproductive tract
[version 2; peer review: 2 approved]
Carla M.J. Muytjens, Yijing Yu, Eleftherios P. Diamandis
Peer Reviewers Georgios Pampalakis; Céline Deraison
LATEST VERSION PUBLISHED 31 Dec 2018
https://doi.org/10.12688/f1000research.9005.3
Software Tool Article metrics
Revised
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
[version 3; peer review: 3 approved]
Charity W. Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon K. Smyth, Matthew E. Ritchie
Peer Reviewers James W. MacDonald; Maria A. Doyle; Jovana Maksimovic
  • Funders
  • Australian Government NHMRC IRIISS
  • State Government Operational Infrastructure Support
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 28 Dec 2018
https://doi.org/10.12688/f1000research.16106.1
Review metrics
Making gene editing a therapeutic reality
[version 1; peer review: 2 approved]
Irina M. Conboy, Niren Murthy, Jessy Etienne, Zachery Robinson
Peer Reviewers Bé Wieringa; Michael Rudnicki
  • Funder
  • National Institutes of Health
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.15274.1
Review metrics
Recent advances in functional genome analysis
[version 1; peer review: 2 approved]
Roderic Guigo, Michiel de Hoon
Peer Reviewers Feng Zhang; Kerstin Lindblad-Toh
  • Funder
  • Program “Salvador de Madariaga”, Spanish Ministry of Education, Culture and Sports.
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.15935.1
Review metrics
Out of sight, out of mind? Germ cells and the potential impacts of epigenomic drugs
[version 1; peer review: 3 approved]
Ellen G. Jarred, Heidi Bildsoe, Patrick S. Western
Peer Reviewers David Brocks; Marisa Bartolomei; Douglas T Carrell
  • Funder
  • National Health and Medical Research Council
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.16755.1
Review metrics
Dissecting diffuse large B-cell lymphomas of the “not otherwise specified” type: the impact of molecular techniques
[version 1; peer review: 2 approved]
Stefano A Pileri, Enrico Derenzini, Federica Melle, Giovanna Motta, Angelica Calleri, Pierluigi Antoniotti, Virginia Maltoni, Sebastiano Spagnolo, Stefano Fiori, Valentina Tabanelli, Marco Fabbri
Peer Reviewers Ken H Young; David M Aboulafia
  • Funder
  • Italian Association for Cancer Research (AIRC)
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.16659.2
Method Article metrics
Revised
Embryonic zebrafish xenograft assay of human cancer metastasis
[version 2; peer review: 2 approved]
David Hill, Lanpeng Chen, Ewe Snaar-Jagalska, Bill Chaudhry
Peer Reviewers Adam Hurlstone; Yi Feng
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • KWF Kankerbestrijding
LATEST VERSION PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.15447.2
Research Article metrics
Revised
Nucleocytoplasmic distribution of S6K1 depends on the density and motility of MCF-7 cells in vitro
[version 2; peer review: 2 approved]
Viktoriia Kosach, Kateryna Shkarina, Anastasiia Kravchenko, Yuliia Tereshchenko, Evelina Kovalchuk, Larysa Skoroda, Mykhailo Krotevych, Antonina Khoruzhenko
Peer Reviewers Olivier E. Pardo; Yegor Vassetzky and Svetlana Dokudovskaya
  • Funder
  • National Academy of Sciences of Ukraine
LATEST VERSION PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.10138.2
Research Article metrics
Revised
Mapping of microRNAs related to cervical cancer in Latin American human genomic variants
[version 2; peer review: 2 approved]
Milena Guerrero Flórez, Olivia Alexandra Guerrero Gómez, Jaqueline Mena Huertas, María Clara Yépez Chamorro
Peer Reviewers Juan Manuel Anzola; Subhash Mohan Agarwal
LATEST VERSION PUBLISHED 05 Dec 2018
https://doi.org/10.12688/f1000research.15511.2
Method Article metrics
Revised
Using zebrafish to study the function of nephronophthisis and related ciliopathy genes
[version 2; peer review: 3 approved]
Elisa Molinari, Simon A. Ramsbottom, Veronica Sammut, Frances E. P. Hughes, John A. Sayer
Peer Reviewers Weibin Zhou; Glenn P. Lobo; Roslyn Simms
  • Funders
  • Kidney Research UK
  • Northern Counties Kidney Research Fund
  • Medical Research Council
LATEST VERSION PUBLISHED 03 Dec 2018
https://doi.org/10.12688/f1000research.15650.2
Review metrics
Revised
Variation in RAD51 details a hub of functions: opportunities to advance cancer diagnosis and therapy
[version 2; peer review: 4 approved]
Nick LL van der Zon, Roland Kanaar, Claire Wyman
Peer Reviewers Scott W Morrical; Maria Spies; Mauro Modesti; Michael G Sehorn
  • Funders
  • NWO Exact and Natural Sciences
  • NWO Gravitation program CancerGenomiCs.nl
  • KWF Kankerbestrijding
LATEST VERSION PUBLISHED 03 Dec 2018
https://doi.org/10.12688/f1000research.16851.1
Research Article metrics
In vitro inhibitory and biofilm disruptive activities of ginger oil against Enterococcus faecalis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Shahida Mohd-Said, Wee Wee Kweh, Chong Yi Than, Zamirah Zainal-Abidin, Siti Noor Adnalizawati Adnan, Safura Anita Baharin, Eason Soo
Peer Reviewers Lara Thieme and Mathias W. Pletz; Fathilah Binti Abdul Razak
  • Funder
  • Universiti Kebangsaan Malaysia
PUBLISHED 28 Nov 2018
https://doi.org/10.12688/f1000research.16146.1
Review metrics
RNA interactomics: recent advances and remaining challenges
[version 1; peer review: 2 approved]
Brigitte Schönberger, Christoph Schaal, Richard Schäfer, Björn Voß
Peer Reviewers Roland Hartmann; Lennart Randau
  • Funder
  • Bundesministerium für Bildung und Forschung
PUBLISHED 20 Nov 2018
https://doi.org/10.12688/f1000research.15788.1
Review metrics
Recent advances in understanding dominant spinocerebellar ataxias from clinical and genetic points of view
[version 1; peer review: 3 approved]
Giulia Coarelli, Alexis Brice, Alexandra Durr
Peer Reviewers Harry Orr; Bing-wen Soong; Vikram G Shakkottai
PUBLISHED 12 Nov 2018
https://doi.org/10.12688/f1000research.16473.2
Method Article metrics
Revised
Using zebrafish larval models to study brain injury, locomotor and neuroinflammatory outcomes following intracerebral haemorrhage
[version 2; peer review: 2 approved]
Siobhan Crilly, Alexandra Njegic, Sarah E. Laurie, Elisavet Fotiou, Georgina Hudson, Jack Barrington, Kirsty Webb, Helen L. Young, Andrew P. Badrock, Adam Hurlstone, Jack Rivers-Auty, Adrian R. Parry-Jones, Stuart M. Allan, Paul R. Kasher
Peer Reviewers Claire L. Gibson; Marietta Zille
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Stroke Association
  • National Centre for the Replacement, Refinement and Reduction of Animals in Research
  • British Heart Foundation
LATEST VERSION PUBLISHED 08 Nov 2018
https://doi.org/10.12688/f1000research.13864.2
Research Article metrics
Revised
Loss of Zbtb32 in NOD mice does not significantly alter T cell responses.
[version 2; peer review: 2 approved]
William D. Coley, Yongge Zhao, Charles J. Benck, Yi Liu, Chie Hotta-Iwamura, M. Jubayer Rahman, Kristin V Tarbell
Peer Reviewers Hubert M. Tse; Ivan C. Gerling
  • Funder
  • National Institute of Diabetes and Digestive and Kidney Diseases
LATEST VERSION PUBLISHED 05 Nov 2018
https://doi.org/10.12688/f1000research.15534.1
Research Article metrics
Molecular and in-silico analysis of single nucleotide polymorphism targeting human TP53 gene exon 5-8 in Sudanese esophageal cancer patients
[version 1; peer review: 2 approved, 1 approved with reservations]
Rihab M. Elfaki, Mohammed S. Abdelaziz, Hisham N. Altayb, Munsoor M. Munsoor, Ahmed A. Gameel
Peer Reviewers Carlos Mario Muñetón Peña; Naoise Synnott; Hideo Baba
PUBLISHED 02 Nov 2018
https://doi.org/10.12688/f1000research.15797.1
Review metrics
Epigenomic regulation of heart failure: integrating histone marks, long noncoding RNAs, and chromatin architecture
[version 1; peer review: 2 approved]
Timothy A. McKinsey, Thomas M. Vondriska, Yibin Wang
Peer Reviewers Assam El-Osta; Gianluigi Condorelli
  • Funders
  • American Heart Association
  • National Heart, Lung, and Blood Institute
  • David Geffen School of Medicine at UCLA
  • National Institutes of Health
PUBLISHED 29 Oct 2018
https://doi.org/10.12688/f1000research.16542.1
Research Article metrics
Screening of protease, cellulase, amylase and xylanase from the salt-tolerant and thermostable marine Bacillus subtilis strain SR60
[version 1; peer review: 1 approved with reservations, 1 not approved]
Bruno Oliveira de Veras, Yago Queiroz dos Santos, Katharina Marquez Diniz, Gabriela Silva Campos Carelli, Elizeu Antunes dos Santos
Peer Reviewers Jorge Olmos-Soto; Shohreh Ariaeenejad
  • Funder
  • Universidade Federal de Pernambuco
PUBLISHED 26 Oct 2018
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