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https://doi.org/10.12688/f1000research.16356.1
Review metrics
Recent advances in surgical management of urinary incontinence
[version 1; peer review: 2 approved]
Alison Downey, Richard D. Inman
Peer Reviewers Wayne J. G. Hellstrom and Pete Tsambarlis; David Waltregny
PUBLISHED 31 Jul 2019
https://doi.org/10.12688/f1000research.18491.1
Review metrics
Polygenic risk scores in psychiatry: Will they be useful for clinicians?
[version 1; peer review: 4 approved]
Janice M. Fullerton, John I. Nurnberger
Peer Reviewers Joanna M. Biernacka; Jeremy Hall; Ingrid Melle; Cathryn M. Lewis
  • Funders
  • National Institute of Mental Health
  • Janette Mary O'Neil Research Fellowship
  • Australian National Health and Medical Research Council
PUBLISHED 31 Jul 2019
https://doi.org/10.12688/f1000research.19140.1
Software Tool Article metrics
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich’s ataxia, and other rare iron-related diseases
[version 1; peer review: 2 approved]
Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H.Y. Jiang
Peer Reviewers Karl E Anderson; Robert J. Desnick
  • Funders
  • American Cancer Society
  • WHC
  • U.S. National Library of Medicine
  • University of South Florida
  • National Science Foundation
PUBLISHED 19 Jul 2019
https://doi.org/10.12688/f1000research.18674.2
Software Tool Article metrics
Revised
CGAT-core: a python framework for building scalable, reproducible computational biology workflows
[version 2; peer review: 1 approved, 1 approved with reservations]
Adam P. Cribbs, Sebastian Luna-Valero, Charlotte George, Ian M. Sudbery, Antonio J. Berlanga-Taylor, Stephen N. Sansom, Tom Smith, Nicholas E. Ilott, Jethro Johnson, Jakub Scaber, Katherine Brown, David Sims, Andreas Heger
Peer Reviewers Devon P. Ryan; Alexander Peltzer
  • Funder
  • Medical Research Council
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.17824.2
Method Article metrics
Revised
Enhancing gene set enrichment using networks
[version 2; peer review: 2 approved, 2 approved with reservations]
Michael Prummer
Peer Reviewers Kimberly Glass; Monther Alhamdoosh; Jill P. Mesirov and Alexander Wenzel; Rita Casadio
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.19238.1
Research Article metrics
Screening of terpenoids as potential therapeutics against Zaire ebolavirus infection through pharmacophore-based drug design
[version 1; peer review: 1 approved with reservations, 1 not approved]
Ade Hanna Natalia, Usman Sumo Friend Tambunan
Peer Reviewers Ndumiso N. Mhlongo; Daryono Hadi Tjahjono
  • Funder
  • Universitas Indonesia
PUBLISHED 10 Jul 2019
https://doi.org/10.12688/f1000research.19675.1
Software Tool Article metrics
Large-scale sequence comparisons with sourmash
[version 1; peer review: 2 approved]
N. Tessa Pierce, Luiz Irber, Taylor Reiter, Phillip Brooks, C. Titus Brown
Peer Reviewers Brad Solomon; Rayan Chikhi
  • Funders
  • Gordon and Betty Moore Foundation
  • National Science Foundation
PUBLISHED 04 Jul 2019
https://doi.org/10.12688/f1000research.18480.1
Review metrics
A theoretical model of temperate phages as mediators of gut microbiome dysbiosis
[version 1; peer review: 2 approved]
Derek M. Lin, Henry C. Lin
Peer Reviewers Hariom Yadav; Deanna L Gibson
  • Funder
  • Winkler Bacterial Overgrowth Research Fund
PUBLISHED 01 Jul 2019
https://doi.org/10.12688/f1000research.16454.2
Research Article metrics
Revised
Large-scale analysis of B-cell epitopes of envelope: Implications for Zika vaccine and immunotherapeutic development
[version 2; peer review: 2 approved]
Iman Almansour, Rahaf Alfares, Halah Aljofi
Peer Reviewers Meirong Jia; Sunil K Joshi
  • Funder
  • Imam Abdulrahman Bin Faisal University
LATEST VERSION PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.18142.2
Software Tool Article metrics
Revised
Visualization of the small RNA transcriptome using seqclusterViz
[version 2; peer review: 2 approved]
Lorena Pantano, Francisco Pantano, Eulalia Marti, Shannan Ho Sui
Peer Reviewers Xavier Bofill-De Ros; Stefan Scholten
LATEST VERSION PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.17535.1
Review metrics
Medicines in pregnancy
[version 1; peer review: 3 approved]
Sarah JE Stock, Jane E Norman
Peer Reviewers Euan M. Wallace; David Olson; Jeffrey A Kuller
  • Funders
  • Tommy's
  • Medical Research Council
  • Wellcome Trust
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.19592.1
Software Tool Article metrics
Visualization of drug target interactions in the contexts of pathways and networks with ReactomeFIViz
[version 1; peer review: 3 approved]
Aurora S. Blucher, Shannon K. McWeeney, Lincoln Stein, Guanming Wu
Peer Reviewers Fuhai Li; Aritro Nath; Tero Aittokallio and Ziaurrehman Tanoli
  • Funder
  • National Institutes of Health
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.18456.1
Software Tool Article metrics
A step-by-step guide to analyzing CAGE data using R/Bioconductor
[version 1; peer review: 3 approved]
Malte Thodberg, Albin Sandelin
Peer Reviewers Aaron T. L. Lun; Kenta Nakai and Luis Augusto Eijy Nagai; Nevena Cvetesic
  • Funders
  • Danmarks Frie Forskningsfond
  • Kræftens Bekæmpelse
  • Danish Innovation Fund
  • Lundbeckfonden
  • Novo Nordisk Fonden
PUBLISHED 18 Jun 2019
https://doi.org/10.12688/f1000research.17408.1
Review metrics
Recent advances in endometrial cancer: a review of key clinical trials from 2015 to 2019
[version 1; peer review: 2 approved]
Lindsey M. Charo, Steven C. Plaxe
Peer Reviewers Jan Persson; Anil K Sood
PUBLISHED 12 Jun 2019
https://doi.org/10.12688/f1000research.18952.1
Software Tool Article metrics
Detection and mitigation of spurious antisense expression with RoSA
[version 1; peer review: 2 approved with reservations]
Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna MacKinnon, Céline Duc, Gordon Simpson, Geoffrey J. Barton
Peer Reviewers Ian Sudbery; John Casement and Andreas Werner
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 07 Jun 2019
https://doi.org/10.12688/f1000research.19410.1
Software Tool Article metrics
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem
[version 1; peer review: 2 approved, 1 approved with reservations]
Shian Su, Vincent J. Carey, Lori Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis
Peer Reviewers Simina M. Boca; Mike Smith; Henrik Bengtsson
  • Funders
  • EU H2020 Personalizing Health and Care Program
  • Intramural Research Program, National Institutes of Health
  • National Cancer Institute
  • National Human Genome Research Institute
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.15830.2
Software Tool Article metrics
Revised
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data
[version 2; peer review: 2 approved]
Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael M. Reich, Jill P. Mesirov
Peer Reviewers Timothy Tickle; Joshua Batson
  • Funders
  • Silicon Valley Community Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.18214.2
Software Tool Article metrics
Revised
Assessing drug target suitability using TargetMine
[version 2; peer review: 2 approved]
Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Peer Reviewers Rachel Lyne; Anne Hersey
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.19221.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Innovator Award recognizes William Stafford Noble
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19220.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Overton Prize: Christophe Dessimoz
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
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