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https://doi.org/10.12688/f1000research.16454.2
Research Article metrics
Revised
Large-scale analysis of B-cell epitopes of envelope: Implications for Zika vaccine and immunotherapeutic development
[version 2; peer review: 2 approved]
Iman Almansour, Rahaf Alfares, Halah Aljofi
Peer Reviewers Meirong Jia; Sunil K Joshi
  • Funder
  • Imam Abdulrahman Bin Faisal University
LATEST VERSION PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.18142.2
Software Tool Article metrics
Revised
Visualization of the small RNA transcriptome using seqclusterViz
[version 2; peer review: 2 approved]
Lorena Pantano, Francisco Pantano, Eulalia Marti, Shannan Ho Sui
Peer Reviewers Xavier Bofill-De Ros; Stefan Scholten
LATEST VERSION PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.17535.1
Review metrics
Medicines in pregnancy
[version 1; peer review: 3 approved]
Sarah JE Stock, Jane E Norman
Peer Reviewers Euan M. Wallace; David Olson; Jeffrey A Kuller
  • Funders
  • Tommy's
  • Medical Research Council
  • Wellcome Trust
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.19592.1
Software Tool Article metrics
Visualization of drug target interactions in the contexts of pathways and networks with ReactomeFIViz
[version 1; peer review: 3 approved]
Aurora S. Blucher, Shannon K. McWeeney, Lincoln Stein, Guanming Wu
Peer Reviewers Fuhai Li; Aritro Nath; Tero Aittokallio and Ziaurrehman Tanoli
  • Funder
  • National Institutes of Health
PUBLISHED 20 Jun 2019
https://doi.org/10.12688/f1000research.18456.1
Software Tool Article metrics
A step-by-step guide to analyzing CAGE data using R/Bioconductor
[version 1; peer review: 3 approved]
Malte Thodberg, Albin Sandelin
Peer Reviewers Aaron T. L. Lun; Kenta Nakai and Luis Augusto Eijy Nagai; Nevena Cvetesic
  • Funders
  • Danmarks Frie Forskningsfond
  • Kræftens Bekæmpelse
  • Danish Innovation Fund
  • Lundbeckfonden
  • Novo Nordisk Fonden
PUBLISHED 18 Jun 2019
https://doi.org/10.12688/f1000research.17408.1
Review metrics
Recent advances in endometrial cancer: a review of key clinical trials from 2015 to 2019
[version 1; peer review: 2 approved]
Lindsey M. Charo, Steven C. Plaxe
Peer Reviewers Jan Persson; Anil K Sood
PUBLISHED 12 Jun 2019
https://doi.org/10.12688/f1000research.18952.1
Software Tool Article metrics
Detection and mitigation of spurious antisense expression with RoSA
[version 1; peer review: 2 approved with reservations]
Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna MacKinnon, Céline Duc, Gordon Simpson, Geoffrey J. Barton
Peer Reviewers Ian Sudbery; John Casement and Andreas Werner
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 07 Jun 2019
https://doi.org/10.12688/f1000research.19410.1
Software Tool Article metrics
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem
[version 1; peer review: 2 approved, 1 approved with reservations]
Shian Su, Vincent J. Carey, Lori Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis
Peer Reviewers Simina M. Boca; Mike Smith; Henrik Bengtsson
  • Funders
  • EU H2020 Personalizing Health and Care Program
  • Intramural Research Program, National Institutes of Health
  • National Cancer Institute
  • National Human Genome Research Institute
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.15830.2
Software Tool Article metrics
Revised
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data
[version 2; peer review: 2 approved]
Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael M. Reich, Jill P. Mesirov
Peer Reviewers Timothy Tickle; Joshua Batson
  • Funders
  • Silicon Valley Community Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.18214.2
Software Tool Article metrics
Revised
Assessing drug target suitability using TargetMine
[version 2; peer review: 2 approved]
Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Peer Reviewers Rachel Lyne; Anne Hersey
  • Funder
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.19221.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Innovator Award recognizes William Stafford Noble
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19220.1
Editorial metrics NOT PEER REVIEWED
2019 ISCB Overton Prize: Christophe Dessimoz
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19219.1
Editorial metrics NOT PEER REVIEWED
Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19218.1
Editorial metrics NOT PEER REVIEWED
2019 Outstanding Contributions to ISCB awarded to Barb Bryant
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.18081.2
Review metrics
Revised
Investigating colistin drug resistance: The role of high-throughput sequencing and bioinformatics
[version 2; peer review: 2 approved, 1 approved with reservations]
Dickson Aruhomukama, Ivan Sserwadda, Gerald Mboowa
Peer Reviewers Alexandre Angers-Loustau; Hosam Mamoon Zowawi and Sharif Hala; Enrico Lavezzo
LATEST VERSION PUBLISHED 20 May 2019
https://doi.org/10.12688/f1000research.17976.2
Software Tool Article metrics
Revised
TFutils: Data structures for transcription factor bioinformatics
[version 2; peer review: 2 approved, 1 not approved]
Benjamin J. Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin Raby, Vincent Carey
Peer Reviewers Lihua Julie Zhu, Haibo Liu and Rui Li; Giovanna Ambrosini, Philipp Bucher and Rui Li; Kevin Ernst and Matthew T. Weirauch
  • Funders
  • National Institute of Allergy and Infectious Diseases
  • National Heart, Lung, and Blood Institute
  • National Cancer Institute
LATEST VERSION PUBLISHED 17 May 2019
https://doi.org/10.12688/f1000research.18939.1
Research Article metrics
Clinical trial
Does handwriting the name of a potential trial participant on an invitation letter improve recruitment rates? A randomised controlled study within a trial
[version 1; peer review: 2 approved]
Jennifer McCaffery, Alex S. Mitchell, Caroline Fairhurst, Sarah Cockayne, Sara Rodgers, Clare Relton, David J. Torgerson, OTIS Study Team
Peer Reviewers Martin C. Gulliford; Miles D. Witham
  • Funders
  • Health Technology Assessment Programme
  • York University
PUBLISHED 14 May 2019
https://doi.org/10.12688/f1000research.14012.3
Software Tool Article metrics
Revised
Gene Annotation Easy Viewer (GAEV): Integrating KEGG’s Gene Function Annotations and Associated Molecular Pathways
[version 3; peer review: 3 approved]
Trung Huynh, Sen Xu
Peer Reviewers Fragiskos N Kolisis and Efthymios Ladoukakis; Tonia S. Schwartz; Simo V. Zhang
  • Funder
  • University of Texas at Arlington
LATEST VERSION PUBLISHED 09 May 2019
https://doi.org/10.12688/f1000research.13204.3
Method Article metrics
Revised
META-pipe cloud setup and execution
[version 3; peer review: 2 approved, 1 approved with reservations]
Aleksandr Agafonov, Kimmo Mattila, Cuong Duong Tuan, Lars Tiede, Inge Alexander Raknes, Lars Ailo Bongo
Peer Reviewers Olivier Collin; Kang Ning; Chunlei Wu
  • Funders
  • Norges Forskningsråd
  • UiT The Arctic University of Norway
  • EGI-Engage
  • Horizon 2020
LATEST VERSION PUBLISHED 02 May 2019
https://doi.org/10.12688/f1000research.17184.1
Review metrics
New advances in perioperative cardioprotection
[version 1; peer review: 2 approved]
Mona Momeni, Stefan De Hert
Peer Reviewers Arthur Bouwman; Gerd Heusch
PUBLISHED 24 Apr 2019
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