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https://doi.org/10.12688/f1000research.19219.1
Editorial metrics NOT PEER REVIEWED
Bonnie Berger named ISCB 2019 ISCB Accomplishments by a Senior Scientist Award recipient
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.19218.1
Editorial metrics NOT PEER REVIEWED
2019 Outstanding Contributions to ISCB awarded to Barb Bryant
[version 1; peer review: not peer reviewed]
Diane Kovats, Ron Shamir, Christiana Fogg
  • Funder
  • International Society for Computational Biology
PUBLISHED 23 May 2019
https://doi.org/10.12688/f1000research.18081.2
Review metrics
Revised
Investigating colistin drug resistance: The role of high-throughput sequencing and bioinformatics
[version 2; peer review: 2 approved, 1 approved with reservations]
Dickson Aruhomukama, Ivan Sserwadda, Gerald Mboowa
Peer Reviewers Alexandre Angers-Loustau; Hosam Mamoon Zowawi and Sharif Hala; Enrico Lavezzo
LATEST VERSION PUBLISHED 20 May 2019
https://doi.org/10.12688/f1000research.17976.2
Software Tool Article metrics
Revised
TFutils: Data structures for transcription factor bioinformatics
[version 2; peer review: 2 approved, 1 not approved]
Benjamin J. Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin Raby, Vincent Carey
Peer Reviewers Lihua Julie Zhu, Haibo Liu and Rui Li; Giovanna Ambrosini, Philipp Bucher and Rui Li; Kevin Ernst and Matthew T. Weirauch
  • Funders
  • National Institute of Allergy and Infectious Diseases
  • National Heart, Lung, and Blood Institute
  • National Cancer Institute
LATEST VERSION PUBLISHED 17 May 2019
https://doi.org/10.12688/f1000research.18939.1
Research Article metrics
Clinical trial
Does handwriting the name of a potential trial participant on an invitation letter improve recruitment rates? A randomised controlled study within a trial
[version 1; peer review: 2 approved]
Jennifer McCaffery, Alex S. Mitchell, Caroline Fairhurst, Sarah Cockayne, Sara Rodgers, Clare Relton, David J. Torgerson, OTIS Study Team
Peer Reviewers Martin C. Gulliford; Miles D. Witham
  • Funders
  • Health Technology Assessment Programme
  • York University
PUBLISHED 14 May 2019
https://doi.org/10.12688/f1000research.14012.3
Software Tool Article metrics
Revised
Gene Annotation Easy Viewer (GAEV): Integrating KEGG’s Gene Function Annotations and Associated Molecular Pathways
[version 3; peer review: 3 approved]
Trung Huynh, Sen Xu
Peer Reviewers Fragiskos N Kolisis and Efthymios Ladoukakis; Tonia S. Schwartz; Simo V. Zhang
  • Funder
  • University of Texas at Arlington
LATEST VERSION PUBLISHED 09 May 2019
https://doi.org/10.12688/f1000research.13204.3
Method Article metrics
Revised
META-pipe cloud setup and execution
[version 3; peer review: 2 approved, 1 approved with reservations]
Aleksandr Agafonov, Kimmo Mattila, Cuong Duong Tuan, Lars Tiede, Inge Alexander Raknes, Lars Ailo Bongo
Peer Reviewers Olivier Collin; Kang Ning; Chunlei Wu
  • Funders
  • Norges Forskningsråd
  • UiT The Arctic University of Norway
  • EGI-Engage
  • Horizon 2020
LATEST VERSION PUBLISHED 02 May 2019
https://doi.org/10.12688/f1000research.17184.1
Review metrics
New advances in perioperative cardioprotection
[version 1; peer review: 2 approved]
Mona Momeni, Stefan De Hert
Peer Reviewers Arthur Bouwman; Gerd Heusch
PUBLISHED 24 Apr 2019
https://doi.org/10.12688/f1000research.18676.1
Software Tool Article metrics
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
[version 1; peer review: 2 approved]
Saket Choudhary
Peer Reviewers Simon Andrews; Ryan K. Dale
PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.18458.2
Software Tool Article metrics
Revised
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
[version 2; peer review: 2 approved]
Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Peer Reviewers Marta Szachniuk; Jerome Waldispühl and Roman Sarrazin-Gendron
  • Funder
  • Austrian Science Fund
LATEST VERSION PUBLISHED 23 Apr 2019
https://doi.org/10.12688/f1000research.15091.2
Research Note metrics
Revised
Investigation of gut microbiome association with inflammatory bowel disease and depression: a machine learning approach
[version 2; peer review: 2 approved with reservations]
Pedro Morell Miranda, Francesca Bertolini, Haja N. Kadarmideen
Peer Reviewers Yasir Suhail; Manikandan Narayanan
  • Funders
  • Technical University of Denmark, DTU Bioinformatics
  • The Danish Independent Research Council
LATEST VERSION PUBLISHED 17 Apr 2019
https://doi.org/10.12688/f1000research.18139.1
Review metrics
Emerging novel agents for patients with advanced Ewing sarcoma: a report from the Children’s Oncology Group (COG) New Agents for Ewing Sarcoma Task Force
[version 1; peer review: 3 approved]
Kelly Bailey, Carrye Cost, Ian Davis, Julia Glade-Bender, Patrick Grohar, Peter Houghton, Michael Isakoff, Elizabeth Stewart, Nadia Laack, Jason Yustein, Damon Reed, Katherine Janeway, Richard Gorlick, Stephen Lessnick, Steven DuBois, Pooja Hingorani
Peer Reviewers Alan W Craft; Antonio Llombart-Bosch; David J Gordon
  • Funder
  • NCTN Operations Center Grant
PUBLISHED 15 Apr 2019
https://doi.org/10.12688/f1000research.16005.3
Software Tool Article metrics
Revised
MSF: Modulated Sub-graph Finder
[version 3; peer review: 3 approved]
Mariam R. Farman, Ivo L. Hofacker, Fabian Amman
Peer Reviewers Guanming Wu; Stefanie Widder; Haibo Liu
  • Funder
  • Austrian Science Fund
LATEST VERSION PUBLISHED 14 Apr 2019
https://doi.org/10.12688/f1000research.18636.1
Method Article metrics
A Bioconductor workflow for the Bayesian analysis of spatial proteomics
[version 1; peer review: 1 approved, 2 approved with reservations]
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D.W. Kirk, Laurent Gatto
Peer Reviewers Pierre M. Jean Beltran; Susan Holmes; Angus Lamond and Alejandro Brenes Murillo
  • Funders
  • Medical Research Council
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.17352.2
Research Note metrics
Revised
A simple formula for enumerating comparisons in trials and network meta-analysis
[version 2; peer review: 2 approved]
Farhad Shokraneh, Clive E. Adams
Peer Reviewers Julie Broderick; G. Mustafa Soomro
  • Funder
  • None
LATEST VERSION PUBLISHED 03 Apr 2019
https://doi.org/10.12688/f1000research.16987.1
Review metrics
Recent technical advances in proteomics
[version 1; peer review: 2 approved]
John R. Yates, III
Peer Reviewers Albert J R. Heck; Ying Ge
  • Funder
  • National Institute of Health
PUBLISHED 29 Mar 2019
https://doi.org/10.12688/f1000research.16252.3
Method Article metrics
Revised
Improved inference of chromosome conformation from images of labeled loci
[version 3; peer review: 2 approved]
Brian C. Ross, James C. Costello
Peer Reviewers Ewan Birney and Carl Barton; Marco Cosentino Lagomarsino and Vittore Scolari
  • Funders
  • Boettcher Foundation
  • Cancer League of Colorado
  • National Institutes of Health
LATEST VERSION PUBLISHED 28 Mar 2019
https://doi.org/10.12688/f1000research.17787.1
Review metrics
Advancing understanding, diagnosis, and therapies for cutaneous lupus erythematosus within the broader context of systemic lupus erythematosus
[version 1; peer review: 3 approved]
Kristen L. Chen, Rebecca L. Krain, Victoria P. Werth
Peer Reviewers Jan P. Dutz; Michelle Kahlenberg; Richard D. Sontheimer
  • Funder
  • National Institutes of Health
PUBLISHED 25 Mar 2019
https://doi.org/10.12688/f1000research.18435.1
Research Article metrics
Interaction of N-3-oxododecanoyl homoserine lactone with transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from molecular docking and dynamics simulations
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Hovakim Grabski, Lernik Hunanyan, Susanna Tiratsuyan, Hrachik Vardapetyan
Peer Reviewers Jon Paczkowski; Faizul Azam; Kapil Dave
  • Funder
  • Russian-Armenian University
PUBLISHED 22 Mar 2019
https://doi.org/10.12688/f1000research.18300.1
Research Article metrics
Clinical trial
Using pens as an incentive for trial recruitment of older adults: An embedded randomised controlled trial
[version 1; peer review: 2 approved]
Katie Whiteside, Lydia Flett, Alex S. Mitchell, Caroline Fairhurst, Sarah Cockayne, Sara Rodgers, David J. Torgerson, OTIS Study Group
Peer Reviewers Daniel Hind; Nicola Mills
  • Funder
  • National Institute for Health Research
PUBLISHED 21 Mar 2019
301-320 of 638 ARTICLES
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