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https://doi.org/10.12688/f1000research.14050.1
Method Article metrics
Gene Unprediction with Spurio: A tool to identify spurious protein sequences
[version 1; peer review: 2 approved]
Wolfram Höps, Matt Jeffryes, Alex Bateman
Peer Reviewers Arne Elofsson; Daniel H. Haft
  • Funder
  • European Molecular Biology Laboratory
PUBLISHED 02 Mar 2018
https://doi.org/10.12688/f1000research.13609.1
Research Article metrics
Effects of umbilical cord- and adipose-derived stem cell secretomes on ALDH1A3 expression and autocrine TGF-β1 signaling in human breast cancer stem cells
[version 1; peer review: 1 approved with reservations, 1 not approved]
Purnamawati Purnamawati, Jeanne Adiwinata Pawitan, Andhika Rachman, Septelia Inawati Wanandi
Peer Reviewers Albert D. Donnenberg; Paola Marcato
  • Funder
  • Universitas Indonesia
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.14060.1
Research Article metrics
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma
[version 1; peer review: 2 approved]
Kenneth W. Witwer
Peer Reviewers Jens Allmer; Claus Heiner Bang-Berthelsen
PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.12252.2
Research Article metrics
Revised
Endoplasmic reticulum-to-Golgi transitions upon herpes virus infection
[version 2; peer review: 1 approved, 3 approved with reservations]
Peter Wild, Andres Kaech, Elisabeth M. Schraner, Ladina Walser, Mathias Ackermann
Peer Reviewers Charles Grose; Gareth Griffiths; Alexandre A. Mironov; José A Martínez-Menárguez
  • Funder
  • Universität Zürich
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.12867.2
Brief Report metrics
Revised
Draft genomes of two Australian strains of the plant pathogen, Phytophthora cinnamomi
[version 2; peer review: 3 approved]
Amy L. Longmuir, Peter L. Beech, Mark F. Richardson
Peer Reviewers Nicolás Daniel Ayub; Erik Andreasson and Laura Grenville Briggs; David J. Studholme
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.11539.2
Brief Report metrics
Revised
Rheumatoid arthritis in an adult patient with mosaic distal 18q-, 18p- and ring chromosome 18
[version 2; peer review: 2 approved]
Alanna Chau, KH Ramesh, Anand D Jagannath, Shitij Arora
Peer Reviewers György Kosztolányi; Jannine D. Cody
LATEST VERSION PUBLISHED 28 Feb 2018
https://doi.org/10.12688/f1000research.13724.1
Method Article metrics
Identification of microsatellite loci in sea anemones Aulactinia stella and Cribrinopsis albopunctata (family Actiniidae)
[version 1; peer review: 3 approved]
Ekaterina S. Bocharova, Alexey A. Sergeev, Aleksandr A. Volkov
Peer Reviewers Boris Levin; Fabián H. Acuña; Svetlana V. Malysheva
  • Funder
  • Russian Foundation for Basic Research
PUBLISHED 27 Feb 2018
https://doi.org/10.12688/f1000research.13577.2
Method Article metrics
Revised
Using regulatory genomics data to interpret the function of disease variants and prioritise genes from expression studies
[version 2; peer review: 2 approved]
Enrico Ferrero
Peer Reviewers Aaron T. L. Lun; Vincent J. Carey
LATEST VERSION PUBLISHED 23 Feb 2018
https://doi.org/10.12688/f1000research.13944.1
Brief Report metrics
Epigenetic silencing of lncRNA MORT in 16 TCGA cancer types
[version 1; peer review: 3 approved]
Lukas Vrba, Bernard W. Futscher
Peer Reviewers Adam R Karpf; Gwen Lomberk; Alexander Dobrovic
  • Funder
  • Maynard Chair in Breast Cancer Epigenomics
PUBLISHED 21 Feb 2018
https://doi.org/10.12688/f1000research.13273.1
Research Article metrics
Cross sectional study to determine chloroquine resistance among Plasmodium falciparum clinical isolates from Khartoum, Sudan
[version 1; peer review: 1 approved, 2 approved with reservations]
Walaa Salah Abdulla Mohammed, Kyakonye Yasin, N.S. Mahgoub, Muzamil Mahdi Abdel Hamid
Peer Reviewers Jagadish Mahanta; Satish K. Dhingra; Gabriel N. Magoma
PUBLISHED 20 Feb 2018
https://doi.org/10.12688/f1000research.13588.1
Review metrics
Progress and challenges in TB vaccine development
[version 1; peer review: 2 approved]
Gerald Voss, Danilo Casimiro, Olivier Neyrolles, Ann Williams, Stefan H.E. Kaufmann, Helen McShane, Mark Hatherill, Helen A Fletcher
Peer Reviewers Rhea Coler; Ashley Birkett
  • Funder
  • Tuberculosis Vaccine Initiative
PUBLISHED 16 Feb 2018
https://doi.org/10.12688/f1000research.12393.2
Research Article metrics
Revised
Spatial intratumoural heterogeneity in the expression of GIT1 is associated with poor prognostic outcome in oestrogen receptor positive breast cancer patients with synchronous lymph node metastases
[version 2; peer review: 2 approved]
Ibai Goicoechea, Ricardo Rezola, María Arestin, María M. Caffarel, Ana Rosa Cortazar, Lorea Manterola, Marta Fernandez-Mercado, María Armesto, Carla Sole, Erika Larrea, Angela M. Araujo, Nerea Ancizar, Arrate Plazaola, Ander Urruticoechea, Arkaitz Carracedo, Irune Ruiz, Isabel Alvarez Lopez, Charles H. Lawrie
Peer Reviewers Mona M. Mohamed; Richard T. Premont
  • Funders
  • Fundación Caja Navarra
  • Starmer-Smith Memorial Fund
  • European Research Council
  • Diputación Foral de Guipuzcoa
  • FERO VIII
  • Ikerbasque, Basque Foundation for Science
  • Ministerio de Economía y Competitividad
  • Fundación Científica Asociación Española Contra el Cáncer
  • Basque Government
  • European Regional Development Fund
LATEST VERSION PUBLISHED 14 Feb 2018
https://doi.org/10.12688/f1000research.13841.1
Brief Report metrics
A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forest
[version 1; peer review: 2 approved]
Erick S. LeBrun, Sanghoon Kang
Peer Reviewers Ye Deng; Joy D Van Nostrand
PUBLISHED 12 Feb 2018
https://doi.org/10.12688/f1000research.12090.2
Research Article metrics
Revised
Dermal fibroblasts from patients with Parkinson’s disease have normal GCase activity and autophagy compared to patients with PD and GBA mutations
[version 2; peer review: 2 approved]
Lucy M Collins, Janelle Drouin-Ouellet, Wei-Li Kuan, Timothy Cox, Roger A Barker
Peer Reviewers Dario Besusso; Mia Horowitz
  • Funders
  • Rosetrees Trust
  • National Institute for Health Research
  • Wellcome Trust-Medical Research Council Stem Cell Institute
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 09 Feb 2018
https://doi.org/10.12688/f1000research.13565.1
Brief Report metrics
Genetic analysis of measles virus nucleocapsid gene identifies measles virus isolate of close similarity to Clade A viruses from Nigeria
[version 1; peer review: 1 approved with reservations, 1 not approved]
Adedayo O. Faneye, Johnson A. Adeniji, Babatunde O. Motayo
Peer Reviewers Kevin E. Brown; Ismaila Shittu
PUBLISHED 07 Feb 2018
https://doi.org/10.12688/f1000research.13598.1
Opinion Article metrics
Ten steps to get started in Genome Assembly and Annotation
[version 1; peer review: 2 approved]
Victoria Dominguez Del Angel, Erik Hjerde, Lieven Sterck, Salvadors Capella-Gutierrez, Cederic Notredame, Olga Vinnere Pettersson, Joelle Amselem, Laurent Bouri, Stephanie Bocs, Christophe Klopp, Jean-Francois Gibrat, Anna Vlasova, Brane L. Leskosek, Lucile Soler, Mahesh Binzer-Panchal, Henrik Lantz
Peer Reviewers Bruno Contreras-Moreira; Dave Clements
  • Funder
  • Horizon 2020
PUBLISHED 05 Feb 2018
https://doi.org/10.12688/f1000research.12833.1
Review metrics
The Art of War: harnessing the epigenome against cancer
[version 1; peer review: 4 approved]
Jonathan Nye, Daniël P. Melters, Yamini Dalal
Peer Reviewers Zhiguo Zhang; Peter Adams; Genevieve Almouzni; Sandra B Hake
  • Funder
  • National Institutes of Health
PUBLISHED 02 Feb 2018
https://doi.org/10.12688/f1000research.12120.1
Review metrics
NAD+ biosynthesis, aging, and disease
[version 1; peer review: 2 approved]
Sean Johnson, Shin–ichiro Imai
Peer Reviewers Wendy Hanna-Rose; Eduardo N Chini
  • Funders
  • Tanaka Fund
  • American Federation for Aging Research
  • National Institute on Aging
PUBLISHED 01 Feb 2018
https://doi.org/10.12688/f1000research.12707.2
Software Tool Article metrics
Revised
CellMap visualizes protein-protein interactions and subcellular localization
[version 2; peer review: 2 approved]
Christian Dallago, Tatyana Goldberg, Miguel Angel Andrade-Navarro, Gregorio Alanis-Lobato, Burkhard Rost
Peer Reviewers Sandra Orchard; Augustin Luna
  • Funders
  • Technische Universität München
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 01 Feb 2018
https://doi.org/10.12688/f1000research.11616.2
Method Article metrics
Revised
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression
[version 2; peer review: 2 approved]
Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov
Peer Reviewers Isha Sethi; Andrew D Sharrocks and Munazah Andrabi
  • Funder
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 30 Jan 2018
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