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https://doi.org/10.12688/f1000research.13944.1
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Epigenetic silencing of lncRNA MORT in 16 TCGA cancer types
[version 1; peer review: 3 approved]
Lukas Vrba, Bernard W. Futscher
Peer Reviewers Adam R Karpf; Gwen Lomberk; Alexander Dobrovic
  • Funder
  • Maynard Chair in Breast Cancer Epigenomics
PUBLISHED 21 Feb 2018
https://doi.org/10.12688/f1000research.13273.1
Research Article metrics
Cross sectional study to determine chloroquine resistance among Plasmodium falciparum clinical isolates from Khartoum, Sudan
[version 1; peer review: 1 approved, 2 approved with reservations]
Walaa Salah Abdulla Mohammed, Kyakonye Yasin, N.S. Mahgoub, Muzamil Mahdi Abdel Hamid
Peer Reviewers Jagadish Mahanta; Satish K. Dhingra; Gabriel N. Magoma
PUBLISHED 20 Feb 2018
https://doi.org/10.12688/f1000research.13588.1
Review metrics
Progress and challenges in TB vaccine development
[version 1; peer review: 2 approved]
Gerald Voss, Danilo Casimiro, Olivier Neyrolles, Ann Williams, Stefan H.E. Kaufmann, Helen McShane, Mark Hatherill, Helen A Fletcher
Peer Reviewers Rhea Coler; Ashley Birkett
  • Funder
  • Tuberculosis Vaccine Initiative
PUBLISHED 16 Feb 2018
https://doi.org/10.12688/f1000research.12393.2
Research Article metrics
Revised
Spatial intratumoural heterogeneity in the expression of GIT1 is associated with poor prognostic outcome in oestrogen receptor positive breast cancer patients with synchronous lymph node metastases
[version 2; peer review: 2 approved]
Ibai Goicoechea, Ricardo Rezola, María Arestin, María M. Caffarel, Ana Rosa Cortazar, Lorea Manterola, Marta Fernandez-Mercado, María Armesto, Carla Sole, Erika Larrea, Angela M. Araujo, Nerea Ancizar, Arrate Plazaola, Ander Urruticoechea, Arkaitz Carracedo, Irune Ruiz, Isabel Alvarez Lopez, Charles H. Lawrie
Peer Reviewers Mona M. Mohamed; Richard T. Premont
  • Funders
  • Fundación Caja Navarra
  • Starmer-Smith Memorial Fund
  • European Research Council
  • Diputación Foral de Guipuzcoa
  • FERO VIII
  • Ikerbasque, Basque Foundation for Science
  • Ministerio de Economía y Competitividad
  • Fundación Científica Asociación Española Contra el Cáncer
  • Basque Government
  • European Regional Development Fund
LATEST VERSION PUBLISHED 14 Feb 2018
https://doi.org/10.12688/f1000research.13841.1
Brief Report metrics
A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forest
[version 1; peer review: 2 approved]
Erick S. LeBrun, Sanghoon Kang
Peer Reviewers Ye Deng; Joy D Van Nostrand
PUBLISHED 12 Feb 2018
https://doi.org/10.12688/f1000research.12090.2
Research Article metrics
Revised
Dermal fibroblasts from patients with Parkinson’s disease have normal GCase activity and autophagy compared to patients with PD and GBA mutations
[version 2; peer review: 2 approved]
Lucy M Collins, Janelle Drouin-Ouellet, Wei-Li Kuan, Timothy Cox, Roger A Barker
Peer Reviewers Dario Besusso; Mia Horowitz
  • Funders
  • Rosetrees Trust
  • National Institute for Health Research
  • Wellcome Trust-Medical Research Council Stem Cell Institute
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 09 Feb 2018
https://doi.org/10.12688/f1000research.13565.1
Brief Report metrics
Genetic analysis of measles virus nucleocapsid gene identifies measles virus isolate of close similarity to Clade A viruses from Nigeria
[version 1; peer review: 1 approved with reservations, 1 not approved]
Adedayo O. Faneye, Johnson A. Adeniji, Babatunde O. Motayo
Peer Reviewers Kevin E. Brown; Ismaila Shittu
PUBLISHED 07 Feb 2018
https://doi.org/10.12688/f1000research.13598.1
Opinion Article metrics
Ten steps to get started in Genome Assembly and Annotation
[version 1; peer review: 2 approved]
Victoria Dominguez Del Angel, Erik Hjerde, Lieven Sterck, Salvadors Capella-Gutierrez, Cederic Notredame, Olga Vinnere Pettersson, Joelle Amselem, Laurent Bouri, Stephanie Bocs, Christophe Klopp, Jean-Francois Gibrat, Anna Vlasova, Brane L. Leskosek, Lucile Soler, Mahesh Binzer-Panchal, Henrik Lantz
Peer Reviewers Bruno Contreras-Moreira; Dave Clements
  • Funder
  • Horizon 2020
PUBLISHED 05 Feb 2018
https://doi.org/10.12688/f1000research.12833.1
Review metrics
The Art of War: harnessing the epigenome against cancer
[version 1; peer review: 4 approved]
Jonathan Nye, Daniël P. Melters, Yamini Dalal
Peer Reviewers Zhiguo Zhang; Peter Adams; Genevieve Almouzni; Sandra B Hake
  • Funder
  • National Institutes of Health
PUBLISHED 02 Feb 2018
https://doi.org/10.12688/f1000research.12120.1
Review metrics
NAD+ biosynthesis, aging, and disease
[version 1; peer review: 2 approved]
Sean Johnson, Shin–ichiro Imai
Peer Reviewers Wendy Hanna-Rose; Eduardo N Chini
  • Funders
  • Tanaka Fund
  • American Federation for Aging Research
  • National Institute on Aging
PUBLISHED 01 Feb 2018
https://doi.org/10.12688/f1000research.12707.2
Software Tool Article metrics
Revised
CellMap visualizes protein-protein interactions and subcellular localization
[version 2; peer review: 2 approved]
Christian Dallago, Tatyana Goldberg, Miguel Angel Andrade-Navarro, Gregorio Alanis-Lobato, Burkhard Rost
Peer Reviewers Sandra Orchard; Augustin Luna
  • Funders
  • Technische Universität München
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 01 Feb 2018
https://doi.org/10.12688/f1000research.11616.2
Method Article metrics
Revised
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression
[version 2; peer review: 2 approved]
Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov
Peer Reviewers Isha Sethi; Andrew D Sharrocks and Munazah Andrabi
  • Funder
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 30 Jan 2018
https://doi.org/10.12688/f1000research.13154.1
Research Article metrics
Analysis of pluripotency marker expression in human glioblastoma multiforme cells treated with conditioned medium of umbilical cord-derived mesenchymal stem cells
[version 1; peer review: 2 not approved]
Novi Silvia Hardiany, Purnamawati Huang, Syarifah Dewi, Reni Paramita, Septelia Inawati Wanandi
Peer Reviewers Jie Sun; Isabele C. Iser
  • Funder
  • Direktorat Riset dan Pengabdian Masyarakat Universitas Indonesia
PUBLISHED 25 Jan 2018
https://doi.org/10.12688/f1000research.13213.1
Review metrics
Recent advances in understanding hematopoiesis in Fanconi Anemia
[version 1; peer review: 4 approved]
Grover Bagby
Peer Reviewers Qishen Pang; Andrew Deans; Jakub Tolar; Alex Lyakhovich
  • Funders
  • National Institutes of Health
  • U.S. Department of Veterans Affairs
PUBLISHED 24 Jan 2018
https://doi.org/10.12688/f1000research.11395.4
Research Article metrics
Revised
BRCA1 novel variation V1736D and in silico analysis of SNP Q356R in Sudanese patients with breast cancer
[version 4; peer review: 1 approved, 2 not approved]
Mohamed Elmogtba Mouaweia Mohamed Aabdein, Alsmawal Awad Mohammed Elimam, Hisham N. Altayb, Mohamed El-Fatih Mohy Eldeen, Mosab Mohamed Gasemelseed, Afra AbdElhamid FadlAlla, Marwa Mohamed Osman, Soada Ahmed Osman, Hajir Ali Saeed, Mona ShamsAldeen Ali, Tomador Siddig, Reem Abdelrahman Osman, Rehab Ahmed Elhadi, Muzamil Mahdi Abdel Hamid, Mohamed Ahmed Salih
Peer Reviewers Habiba Chaabouni-Bouhamed; Mahmoud Balbaa; Khalid Dafaallah Awadelkarim
LATEST VERSION PUBLISHED 24 Jan 2018
https://doi.org/10.12688/f1000research.13732.1
Research Article metrics
Comparative genomic analysis of crustacean hyperglycemic hormone (CHH) neuropeptide genes across diverse crustacean species
[version 1; peer review: 1 approved, 2 approved with reservations]
Wai Hoong Chang, Alvina G. Lai
Peer Reviewers Abigail Elizur and Tuan V. Nguyen; Chi-Ying Lee and Jean-Yves Toullec; Jos H. M. Schippers
  • Funders
  • European Molecular Biology Organization
  • Human Frontier Science Program
PUBLISHED 23 Jan 2018
https://doi.org/10.12688/f1000research.6568.2
Research Article metrics
Revised
Effects of conventional immunosuppressive therapy on functional and pathological features of CNS lupus in NZB/W mice
[version 2; peer review: 1 approved, 1 approved with reservations]
Jessy Alexander, Alexander Jacob, Richard J. Quigg
Peer Reviewers Trine N Jørgensen; Christopher Reilly
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Jan 2018
https://doi.org/10.12688/f1000research.13311.1
Research Article metrics
Cell-specific cis-natural antisense transcripts (cis-NATs) in the sperm and the pollen vegetative cells of Arabidopsis thaliana
[version 1; peer review: 3 approved]
Peng Qin, Ann E. Loraine, Sheila McCormick
Peer Reviewers Hailing Jin; Robert A. Martienssen and Cristiane Alves; Jules Deforges
  • Funder
  • United States Department of Agriculture Current Research Information System
PUBLISHED 22 Jan 2018
https://doi.org/10.12688/f1000research.13659.1
Research Article metrics
Shared genetic requirements for ATF5 translation in the vomeronasal organ and main olfactory epithelium
[version 1; peer review: 3 approved with reservations]
Ryan P Dalton
Peer Reviewers Paolo E. Forni; Gustav F. Jirikowski and Andrea Rodewald; Pelin Cayirlioglu Volkan and Scott Barish
  • Funder
  • Genentech
PUBLISHED 17 Jan 2018
https://doi.org/10.12688/f1000research.6746.2
Research Article metrics
Revised
Temporal order of RNase IIIb and loss-of-function mutations during development determines phenotype in pleuropulmonary blastoma / DICER1 syndrome: a unique variant of the two-hit tumor suppression model
[version 2; peer review: 2 approved]
Mark Brenneman, Amanda Field, Jiandong Yang, Gretchen Williams, Leslie Doros, Christopher Rossi, Kris Ann Schultz, Avi Rosenberg, Jennifer Ivanovich, Joyce Turner, Heather Gordish-Dressman, Douglas Stewart, Weiying Yu, Anne Harris, Peter Schoettler, Paul Goodfellow, Louis Dehner, Yoav Messinger, D. Ashley Hill
Peer Reviewers Julian A. Martinez-Agosto and Steven Klein; James F. Amatruda and Kenneth S. Chen
LATEST VERSION PUBLISHED 12 Jan 2018
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