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https://doi.org/10.12688/f1000research.19743.1
Study Protocol metrics
Protocol for a factorial randomised controlled trial, embedded within WHiTE 8 COPAL, of an Enhanced Trainee Principal Investigator Package and Additional Digital Nudge to increase recruitment rates
[version 1; peer review: 2 approved]
Nickil Agni, Caroline Fairhurst, Catriona McDaid, Mike Reed, David J. Torgerson
Peer Reviewers Mike Clarke; Kath Star and Victoria Bell
PUBLISHED 22 Jul 2019
https://doi.org/10.12688/f1000research.19140.1
Software Tool Article metrics
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich’s ataxia, and other rare iron-related diseases
[version 1; peer review: 2 approved]
Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H.Y. Jiang
Peer Reviewers Karl E Anderson; Robert J. Desnick
  • Funders
  • American Cancer Society
  • WHC
  • U.S. National Library of Medicine
  • University of South Florida
  • National Science Foundation
PUBLISHED 19 Jul 2019
https://doi.org/10.12688/f1000research.18674.2
Software Tool Article metrics
Revised
CGAT-core: a python framework for building scalable, reproducible computational biology workflows
[version 2; peer review: 1 approved, 1 approved with reservations]
Adam P. Cribbs, Sebastian Luna-Valero, Charlotte George, Ian M. Sudbery, Antonio J. Berlanga-Taylor, Stephen N. Sansom, Tom Smith, Nicholas E. Ilott, Jethro Johnson, Jakub Scaber, Katherine Brown, David Sims, Andreas Heger
Peer Reviewers Devon P. Ryan; Alexander Peltzer
  • Funder
  • Medical Research Council
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.17824.2
Method Article metrics
Revised
Enhancing gene set enrichment using networks
[version 2; peer review: 2 approved, 2 approved with reservations]
Michael Prummer
Peer Reviewers Kimberly Glass; Monther Alhamdoosh; Jill P. Mesirov and Alexander Wenzel; Rita Casadio
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.17972.2
Review metrics
Revised
How ‘smart’ is smart dentistry?
[version 2; peer review: 2 approved]
Peter Kokol, Helena Blažun Vošner, Jernej Završnik, Marko Turčin
Peer Reviewers Wan Zaripah Wan Bakar and Huwaina Abd Ghani; Praveen Arany
LATEST VERSION PUBLISHED 16 Jul 2019
https://doi.org/10.12688/f1000research.18757.1
Research Article metrics
Understanding the contribution of UK public health research to clinical guidelines: a bibliometric analysis
[version 1; peer review: 2 approved]
Susan Guthrie, Gavin Cochrane, Advait Deshpande, Benoit Macaluso, Vincent Larivière
Peer Reviewers Mike Thelwall; Claudio Tresoldi and Andrea Tittarelli
  • Funder
  • Department of Health & Social Care
PUBLISHED 15 Jul 2019
https://doi.org/10.12688/f1000research.17952.2
Method Article metrics
Revised
Updating the evidence on the effectiveness of the alcohol reduction app, Drink Less: using Bayes factors to analyse trial datasets supplemented with extended recruitment
[version 2; peer review: 2 approved]
Claire Garnett, Susan Michie, Robert West, Jamie Brown
Peer Reviewers Daniel Leightley; Nick Heather
  • Funders
  • Cancer Research UK
  • UK Centre for Tobacco and Alcohol Studies
  • National Institute for Health Research
  • Society for the Study of Addiction
LATEST VERSION PUBLISHED 15 Jul 2019
https://doi.org/10.12688/f1000research.19764.1
Editorial metrics NOT PEER REVIEWED
Repositioning the Chemical Information Science Gateway
[version 1; peer review: not peer reviewed]
Jürgen Bajorath
PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.18142.2
Software Tool Article metrics
Revised
Visualization of the small RNA transcriptome using seqclusterViz
[version 2; peer review: 2 approved]
Lorena Pantano, Francisco Pantano, Eulalia Marti, Shannan Ho Sui
Peer Reviewers Xavier Bofill-De Ros; Stefan Scholten
LATEST VERSION PUBLISHED 27 Jun 2019
https://doi.org/10.12688/f1000research.16483.2
Software Tool Article metrics
Revised
FDTool: a Python application to mine for functional dependencies and candidate keys in tabular data
[version 2; peer review: 2 approved]
Matt Buranosky, Elmar Stellnberger, Emily Pfaff, David Diaz-Sanchez, Cavin Ward-Caviness
Peer Reviewers Howard J. Hamilton and Shubhashis Shil; Sayan Mukherjee
  • Funder
  • U.S. Environmental Protection Agency
LATEST VERSION PUBLISHED 19 Jun 2019
https://doi.org/10.12688/f1000research.19013.1
Method Article metrics
de.NBI Cloud federation through ELIXIR AAI
[version 1; peer review: 2 approved, 1 not approved]
Peter Belmann, Björn Fischer, Jan Krüger, Michal Procházka, Helena Rasche, Manuel Prinz, Maximilian Hanussek, Martin Lang, Felix Bartusch, Benjamin Gläßle, Jens Krüger, Alfred Pühler, Alexander Sczyrba
Peer Reviewers Enol Fernández-del-Castillo; Dixie Baker; Volker P. Brendel
  • Funder
  • Bundesministerium für Bildung und Forschung
PUBLISHED 10 Jun 2019
https://doi.org/10.12688/f1000research.17005.2
Software Tool Article metrics
Revised
The InterMine Android app: Cross-organism genomic data in your pocket
[version 2; peer review: 2 approved]
Daria Komkova, Rachel Lyne, Julie Sullivan, Yo Yehudi, Gos Micklem
Peer Reviewers Johan Nyström-Persson; Zeeshan Ahmed
  • Funder
  • The Wellcome Trust
LATEST VERSION PUBLISHED 07 Jun 2019
https://doi.org/10.12688/f1000research.18952.1
Software Tool Article metrics
Detection and mitigation of spurious antisense expression with RoSA
[version 1; peer review: 2 approved with reservations]
Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna MacKinnon, Céline Duc, Gordon Simpson, Geoffrey J. Barton
Peer Reviewers Ian Sudbery; John Casement and Andreas Werner
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 07 Jun 2019
https://doi.org/10.12688/f1000research.16866.2
Software Tool Article metrics
Revised
Carrying out streamlined routine data analyses with reports for observational studies: introduction to a series of generic SAS® macros
[version 2; peer review: 2 approved]
Yuan Liu, Dana C. Nickleach, Chao Zhang, Jeffrey M. Switchenko, Jeanne Kowalski
Peer Reviewers Margaret Stedman; Hong-Qiu Gu
  • Funder
  • Winship Cancer Institute
LATEST VERSION PUBLISHED 05 Jun 2019
https://doi.org/10.12688/f1000research.19288.1
Data Note metrics
Attention Network Test fMRI data for participants with Parkinson’s disease and healthy elderly
[version 1; peer review: 2 approved]
Trevor K. M. Day, Tara M. Madhyastha, Mary K. Askren, Peter Boord, Thomas J. Montine, Thomas J. Grabowski
Peer Reviewers Brian Berman; Yong Jeong
  • Funders
  • National Institutes of Health
  • Ruth L. Kirschstein National Research Service Award
PUBLISHED 04 Jun 2019
https://doi.org/10.12688/f1000research.19020.1
Research Article metrics
Sleep monitoring with the Apple Watch: comparison to a clinically validated actigraph
[version 1; peer review: 2 approved with reservations, 1 not approved]
Sirinthip Roomkham, Michael Hittle, Joseph Cheung, David Lovell, Emmanuel Mignot, Dimitri Perrin
Peer Reviewers Sean P. A. Drummond; Lillian Skeiky and Devon A. Hansen; Vincenzo Natale
  • Funder
  • Queensland University of Technology
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.19410.1
Software Tool Article metrics
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem
[version 1; peer review: 2 approved, 1 approved with reservations]
Shian Su, Vincent J. Carey, Lori Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis
Peer Reviewers Simina M. Boca; Mike Smith; Henrik Bengtsson
  • Funders
  • EU H2020 Personalizing Health and Care Program
  • Intramural Research Program, National Institutes of Health
  • National Cancer Institute
  • National Human Genome Research Institute
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.17161.1
Review metrics
Emerging ideas and tools to study the emergent properties of the cortical neural circuits for voluntary motor control in non-human primates
[version 1; peer review: 4 approved]
John F. Kalaska
Peer Reviewers Steve Chase; John P Cunningham; Byron Yu; Hansjörg Scherberger
  • Funder
  • Canadian Institutes of Health Research
PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.15830.2
Software Tool Article metrics
Revised
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data
[version 2; peer review: 2 approved]
Clarence K. Mah, Alexander T. Wenzel, Edwin F. Juarez, Thorin Tabor, Michael M. Reich, Jill P. Mesirov
Peer Reviewers Timothy Tickle; Joshua Batson
  • Funders
  • Silicon Valley Community Foundation
  • National Institutes of Health
LATEST VERSION PUBLISHED 29 May 2019
https://doi.org/10.12688/f1000research.19310.1
Software Tool Article metrics
A new method for detecting abrupt shifts in time series
[version 1; peer review: 2 approved with reservations]
Chris A. Boulton, Timothy M. Lenton
Peer Reviewers Valerie N. Livina; Sonia Kéfi
  • Funder
  • Natural Environment Research Council
PUBLISHED 28 May 2019
461-480 of 1,016 ARTICLES
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