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https://doi.org/10.12688/f1000research.6208.2
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Revised
Resources, challenges and way forward in rare mitochondrial diseases research
[version 2; peer review: 2 approved]
Neeraj Kumar Rajput, Vipin Singh, Anshu Bhardwaj
Peer Reviewers Xin Qi; Vanniarajan Ayyasamy
LATEST VERSION PUBLISHED 13 Aug 2015
https://doi.org/10.12688/f1000research.6767.1
Software Tool Article metrics
CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API
[version 1; peer review: 2 approved]
Keiichiro Ono, Tanja Muetze, Georgi Kolishovski, Paul Shannon, Barry Demchak
Peer Reviewers Sergey Nepomnyachiy; Guanming Wu
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.6773.1
Software Tool Article metrics
SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks
[version 1; peer review: 2 approved]
Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards
Peer Reviewers Ulrich Stelzl; Srikrishna Subramanian and Gurmeet Kaur
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.4392.2
Software Tool Article metrics
Update
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
[version 2; peer review: 3 approved]
John H. Morris, Samad Lotia, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E Ferrin
Peer Reviewers Jiguang Wang; Thomas Kelder; Tamara Munzner
LATEST VERSION PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.6797.1
Software Tool Article metrics
CySpanningTree: Minimal Spanning Tree computation in Cytoscape
[version 1; peer review: 1 approved, 1 approved with reservations]
Faizaan Shaik, Srikanth Bezawada, Neena Goveas
Peer Reviewers Shaillay Dogra; Ankush Sharma
PUBLISHED 05 Aug 2015
https://doi.org/10.12688/f1000research.5921.2
Research Article metrics
Revised
Ligand uptake in Mycobacterium tuberculosis truncated hemoglobins is controlled by both internal tunnels and active site water molecules
[version 2; peer review: 2 approved, 1 approved with reservations]
Ignacio Boron, Juan Pablo Bustamante, Kelly S Davidge, Sandip Singh, Lesley AH Bowman, Mariana Tinajero-Trejo, Sebastián Carballal, Rafael Radi, Robert K Poole, Kanak Dikshit, Dario A Estrin, Marcelo A Marti, Leonardo Boechi
Peer Reviewers Marco Nardini; Michael Wilson; Takashi Yonetani
LATEST VERSION PUBLISHED 22 Jul 2015
https://doi.org/10.12688/f1000research.6157.2
Software Tool Article metrics
Revised
ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines
[version 2; peer review: 1 approved, 2 approved with reservations]
Michael T. Wolfinger, Jörg Fallmann, Florian Eggenhofer, Fabian Amman
Peer Reviewers Angelika Merkel; Brad Chapman; Björn Voß
LATEST VERSION PUBLISHED 20 Jul 2015
https://doi.org/10.12688/f1000research.6464.1
Research Article metrics
SwissPalm: Protein Palmitoylation database
[version 1; peer review: 3 approved]
Mathieu Blanc, Fabrice David, Laurence Abrami, Daniel Migliozzi, Florence Armand, Jérôme Bürgi, Françoise Gisou van der Goot
Peer Reviewers Howard C. Hang and Emmanuelle Thinon; Luke Chamberlain; Anthony Magee
PUBLISHED 16 Jul 2015
https://doi.org/10.12688/f1000research.6670.1
Research Article metrics
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources
[version 1; peer review: 2 approved]
Indika Kahanda, Christopher Funk, Karin Verspoor, Asa Ben-Hur
Peer Reviewers Peter N. Robinson; Shaillay Dogra
PUBLISHED 16 Jul 2015
https://doi.org/10.12688/f1000research.6181.2
Opinion Article metrics
Revised
Finding small molecules for the ‘next Ebola’
[version 2; peer review: 2 approved]
Sean Ekins, Christopher Southan, Megan Coffee
Peer Reviewers Qiaoying Zeng; Martin Zacharias
LATEST VERSION PUBLISHED 07 Jul 2015
https://doi.org/10.12688/f1000research.4477.2
Software Tool Article metrics
Revised
Biological network analysis with CentiScaPe: centralities and experimental dataset integration
[version 2; peer review: 2 approved]
Giovanni Scardoni, Gabriele Tosadori, Mohammed Faizan, Fausto Spoto, Franco Fabbri, Carlo Laudanna
Peer Reviewers Ferenc Jordan; Ankush Sharma
LATEST VERSION PUBLISHED 07 Jul 2015
https://doi.org/10.12688/f1000research.6644.1
Software Tool Article metrics
Constellation Map: Downstream visualization and interpretation of gene set enrichment results
[version 1; peer review: 2 approved]
Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov
Peer Reviewers Hilary Ann Coller; Sayan Mukherjee
PUBLISHED 24 Jun 2015
https://doi.org/10.12688/f1000research.5802.2
Research Article metrics
Revised
The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens
[version 2; peer review: 2 approved, 1 approved with reservations]
Sandeep Chakraborty, My Phu, Tâmara Prado de Morais, Rafael Nascimento, Luiz Ricardo Goulart, Basuthkar J. Rao, Bjarni Asgeirsson, Abhaya M. Dandekar
Peer Reviewers Jean-Marc Berjeaud; Autar Mattoo and Ravinder Goyal; Kevan Hartshorn
LATEST VERSION PUBLISHED 16 Jun 2015
https://doi.org/10.12688/f1000research.6616.1
Editorial metrics NOT PEER REVIEWED
Highlights of the 1st Student Symposium of the ISCB RSG UK
[version 1; peer review: not peer reviewed]
Farzana Rahman, Rohit Farmer, Sayoni Das, Fatima Vayani, Mehedi Hassan
PUBLISHED 16 Jun 2015
https://doi.org/10.12688/f1000research.6536.1
Research Article metrics
A reanalysis of mouse ENCODE comparative gene expression data
[version 1; peer review: 3 approved, 1 approved with reservations]
Yoav Gilad, Orna Mizrahi-Man
Peer Reviewers Rafael A. Irizarry; Michael B. Eisen; Mick Watson; Lior Pachter
PUBLISHED 19 May 2015
https://doi.org/10.12688/f1000research.6392.1
Research Article metrics
A bioinformatics insight to rhizobial globins: gene identification and mapping, polypeptide sequence and phenetic analysis, and protein modeling.
[version 1; peer review: 2 approved]
Reinier Gesto-Borroto, Miriam Sánchez-Sánchez, Raúl Arredondo-Peter
Peer Reviewers Manuel Becana; Paul Twigg
PUBLISHED 13 May 2015
https://doi.org/10.12688/f1000research.6354.1
Software Tool Article metrics
AGRIS: providing access to agricultural research data exploiting open data on the web
[version 1; peer review: 2 approved]
Fabrizio Celli, Thembani Malapela, Karna Wegner, Imma Subirats, Elena Kokoliou, Johannes Keizer
Peer Reviewers Laura Privalle; Robert Paul Davey
PUBLISHED 08 May 2015
https://doi.org/10.12688/f1000research.5813.1
Method Article metrics
Parallel DNA polymerase chain reaction: Synthesis of two different PCR products from a DNA template
[version 1; peer review: 2 approved]
Vikash Bhardwaj, Kulbhushan Sharma
Peer Reviewers Harishkumar Madhyastha; Ram Gopal
PUBLISHED 31 Dec 2014
https://doi.org/10.12688/f1000research.3818.2
Research Article metrics
Revised
Systems analysis of the prostate tumor suppressor NKX3.1 supports roles in DNA repair and luminal cell differentiation
[version 2; peer review: 2 approved]
Chih-Cheng Yang, Alicia Chung, Chia-Yu Ku, Laurence M. Brill, Roy Williams, Dieter A. Wolf
Peer Reviewers Kemal S. Korkmaz; Philip D. Anderson
LATEST VERSION PUBLISHED 18 Dec 2014
https://doi.org/10.12688/f1000research.5753.1
Software Tool Article metrics
Selecting relevant nodes and structures in biological networks. BiNAT: a new plugin for Cytoscape
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Fabio Cumbo, Giovanni Felici, Paola Bertolazzi
Peer Reviewers Emidio Capriotti; Hagen Blankenburg; Vivek Anantharaman
PUBLISHED 21 Nov 2014
561-580 of 631 ARTICLES
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