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https://doi.org/10.12688/f1000research.17518.1
Software Tool Article metrics
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor
[version 1; peer review: 2 approved]
Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent Carey
Peer Reviewers Dennis J. Hazelett; Sheila Reynolds
  • Funders
  • National Institutes of Health
  • Chan Zuckerberg Initiative
PUBLISHED 07 Jan 2019
https://doi.org/10.12688/f1000research.10767.3
Software Tool Article metrics
Revised
Automated Wormscan
[version 3; peer review: 2 approved, 1 approved with reservations]
Timothy Puckering, Jake Thompson, Sushruth Sathyamurthy, Sinduja Sukumar, Tirosh Shapira, Paul Ebert
Peer Reviewers Elena M. Vayndorf; Nathaniel Szewczyk; Courtney Scerbak
  • Funders
  • Australian Federal Government
  • Plant Biosecurity Cooperative Research Centre
  • Australian Research Council
LATEST VERSION PUBLISHED 04 Jan 2019
https://doi.org/10.12688/f1000research.16959.1
Opinion Article metrics
Hackathon-driven tutorial development
[version 1; peer review: 1 approved, 1 approved with reservations]
Bruno M. Grande, Arjun Baghela, Anna Cavalla, Florian Privé, Peter Zhang, Yisong Zhen
Peer Reviewers Ming Tang; Brad A. Chapman
PUBLISHED 24 Dec 2018
https://doi.org/10.12688/f1000research.17456.1
Software Tool Article metrics
pdb-tools: a swiss army knife for molecular structures
[version 1; peer review: 2 approved]
João P. G. L. M. Rodrigues, João M.C. Teixeira, Mikaël Trellet, Alexandre M. J. J. Bonvin
Peer Reviewers Bruno L. Victor; Peter W. Rose
  • Funders
  • Niels-Stensen Fellowship
  • Horizon 2020
PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.15659.1
Review metrics
Recent advances in understanding Propionibacterium acnes (Cutibacterium acnes) in acne
[version 1; peer review: 2 approved]
Eftychia Platsidaki, Clio Dessinioti
Peer Reviewers Christine Roques; Andrew McDowell
PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.13849.2
Software Tool Article metrics
Revised
Breathe Easy EDA: A MATLAB toolbox for psychophysiology data management, cleaning, and analysis
[version 2; peer review: 2 approved]
John C. Ksander, Sarah M. Kark, Christopher R. Madan
Peer Reviewers Edwin S.  Dalmaijer; Jens Foell
  • Funders
  • Searle scholars grant
  • National Institute of Mental Health
  • National Institutes of Health
  • National Institute of General Medical Sciences
  • Canadian Institutes of Health Research
  • National Science Foundation
LATEST VERSION PUBLISHED 14 Dec 2018
https://doi.org/10.12688/f1000research.16060.1
Research Article metrics
DomainBuilder: the knowledge authoring system for SlideTutor Intelligent Tutoring system
[version 1; peer review: 1 approved, 1 approved with reservations]
Eugene Tseytlin, Faina Linkov, Melissa Castine, Elizabeth Legowski, Rebecca S. Jacobson
Peer Reviewers Ana Marusic; Claudia Mello-Thoms
  • Funders
  • Agency for Healthcare Research and Quality
  • National Cancer Institute
  • National Institutes of Health
PUBLISHED 31 Oct 2018
https://doi.org/10.12688/f1000research.16301.2
Software Tool Article metrics
Revised
Increasing workflow development speed and reproducibility with Vectools
[version 2; peer review: 2 approved]
Tyler Weirick, Raphael Müller, Shizuka Uchida
Peer Reviewers Yutaka Saito; Dimitar Vassilev
  • Funders
  • Deutsche Forschungsgemeinschaft
  • Gheens Foundation
  • University of Louisville
LATEST VERSION PUBLISHED 23 Oct 2018
https://doi.org/10.12688/f1000research.16605.1
Software Tool Article metrics
KnetMaps: a BioJS component to visualize biological knowledge networks
[version 1; peer review: 3 approved, 1 approved with reservations]
Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak
Peer Reviewers Ian Dunham and Gareth Peat; Chia-Yi Cheng; Nicholas J. Provart; Ramil Mauleon
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 17 Oct 2018
https://doi.org/10.12688/f1000research.16231.1
Research Article metrics
Raising the status of software in research: A survey-based evaluation of the Software Sustainability Institute Fellowship Programme
[version 1; peer review: 3 approved with reservations]
Shoaib Sufi, Caroline Jay
Peer Reviewers Colin C. Venters; Dan Sholler; Lois Curfman McInnes
  • Funders
  • Economic and Social Research Council
  • Biotechnology and Biological Sciences Research Council
  • Engineering and Physical Sciences Research Council
PUBLISHED 03 Oct 2018
https://doi.org/10.12688/f1000research.15931.2
Software Tool Article metrics
Revised
FastQ Screen: A tool for multi-genome mapping and quality control
[version 2; peer review: 4 approved]
Steven W. Wingett, Simon Andrews
Peer Reviewers Russell Hamilton; Ian J. Donaldson; Stéphane Le Crom and Laurent Jourdren; Matthew D. Teasdale
  • Funders
  • Medical Research Council
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 17 Sep 2018
https://doi.org/10.12688/f1000research.8967.2
Research Article metrics
Revised
An end to end workflow for differential gene expression using Affymetrix microarrays
[version 2; peer review: 2 approved]
Bernd Klaus, Stefanie Reisenauer
Peer Reviewers James W. MacDonald; Andrea Rau
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.14514.1
Review metrics
Recent advances in understanding inherited disorders of keratinization
[version 1; peer review: 4 approved]
Theodore Zaki, Keith Choate
Peer Reviewers Giovanna Zambruno; Judith Fischer; Nathalie Jonca; Masashi Akiyama
PUBLISHED 27 Jun 2018
https://doi.org/10.12688/f1000research.13256.2
Method Article metrics
Revised
META-pipe Authorization service
[version 2; peer review: 2 approved]
Inge Alexander Raknes, Lars Ailo Bongo
Peer Reviewers Mikael Linden; Frank Oliver Glöckner
  • Funders
  • Norges Forskningsråd
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 01 Jun 2018
https://doi.org/10.12688/f1000research.14217.1
Software Tool Article metrics
ShinyDiversity - Understanding Alpha and Beta Diversity through Interactive Visualizations
[version 1; peer review: 1 approved, 1 approved with reservations]
Eric T. Leung, Roshan Noronha, Ali Mirza, Reva Shenwai, Asterios Mpatziakas
Peer Reviewers Jianguo Xia; Richard E. Isaacson
  • Funder
  • U.S. National Library of Medicine
PUBLISHED 20 Apr 2018
https://doi.org/10.12688/f1000research.14016.3
Brief Report metrics
Revised
A biochemical logarithmic sensor with broad dynamic range
[version 3; peer review: 2 approved]
Steven A. Frank
Peer Reviewers Sudin Bhattacharya; Marco Archetti
  • Funder
  • National Science Foundation
LATEST VERSION PUBLISHED 18 Apr 2018
https://doi.org/10.12688/f1000research.13049.2
Software Tool Article metrics
Revised
RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting
[version 2; peer review: 2 approved]
Travis L. Jensen, Michael Frasketi, Kevin Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, Johannes B. Goll
Peer Reviewers Anup Mahurkar; Ben Busby
  • Funders
  • Emmes Corporation
  • National Institutes of Health
LATEST VERSION PUBLISHED 13 Apr 2018
https://doi.org/10.12688/f1000research.14197.1
Software Tool Article metrics
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data
[version 1; peer review: 1 approved, 1 approved with reservations]
Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Tathiane M Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P Berman, Houtan Noushmehr
Peer Reviewers Zuguang Gu; Michael Lawrence
  • Funders
  • Fonds De La Recherche Scientifique - FNRS
  • National Cancer Institute
  • Fundação de Amparo à Pesquisa do Estado de São Paulo
  • Henry Ford Hospital
  • Innoviris
PUBLISHED 10 Apr 2018
https://doi.org/10.12688/f1000research.13010.1
Review metrics
New technology to assess sleep apnea: wearables, smartphones, and accessories
[version 1; peer review: 2 approved]
Thomas Penzel, Christoph Schöbel, Ingo Fietze
Peer Reviewers Guy A. Dumont; Luis A. Hernández Gómez
  • Funders
  • FNUSA-ICRC
  • National program for sustainability, Czech republic
PUBLISHED 29 Mar 2018
https://doi.org/10.12688/f1000research.13359.1
Research Article metrics
Improving paper-based discharge process; a continuous full-cycle quality improvement project in low resource setting
[version 1; peer review: 1 not approved]
Ihab B Abdalrahman, Mohammed Elsanousi Huzaifa Mohammed, Abdelmohaymin A Abdalla, Sulaf Ibrahim Abdelaziz, Aboaagla Abdalbagi Ali, Dina Nader Mutwakel Osman, Ahmed Abdelmoniem Ahmed, Hagir Emad Elwasila, Romaisa Hashim Mokhtar Mohammed, Mohamed Dafaalla
Peer Reviewers Pratap Kumar
PUBLISHED 15 Mar 2018
41-60 of 128 ARTICLES
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