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https://doi.org/10.12688/f1000research.15517.1
Opinion Article metrics
Time to really share real-world data?
[version 1; peer review: 2 approved, 1 approved with reservations]
Sophie Graham, Laura McDonald, Radek Wasiak, Michael Lees, Sreeram Ramagopalan
Peer Reviewers Sajan Khosla; David Madigan; Laurie A. Tomlinson
PUBLISHED 11 Jul 2018
https://doi.org/10.12688/f1000research.13511.3
Method Article metrics
Revised
netSmooth: Network-smoothing based imputation for single cell RNA-seq
[version 3; peer review: 2 approved]
Jonathan Ronen, Altuna Akalin
Peer Reviewers Fernando J. Calero-Nieto and Fiona Kathryn Hamey; Siddharth Dey
  • Funder
  • Helmholtz-Gemeinschaft
LATEST VERSION PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.14612.2
Software Tool Article metrics
Revised
eXamine: Visualizing annotated networks in Cytoscape
[version 2; peer review: 4 approved]
Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Peer Reviewers Barry Demchak; Richa Batra; Markus List; Alexander Pico
LATEST VERSION PUBLISHED 05 Jul 2018
https://doi.org/10.12688/f1000research.8967.2
Research Article metrics
Revised
An end to end workflow for differential gene expression using Affymetrix microarrays
[version 2; peer review: 2 approved]
Bernd Klaus, Stefanie Reisenauer
Peer Reviewers James W. MacDonald; Andrea Rau
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.10411.2
Software Tool Article metrics
Revised
A Bioconductor workflow for processing and analysing spatial proteomics data
[version 2; peer review: 2 approved]
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Peer Reviewers Leonard J. Foster; Daniel J. Stekhoven
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.15119.1
Software Tool Article metrics
Norwegian e-Infrastructure for Life Sciences (NeLS)
[version 1; peer review: 2 approved]
Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matúš Kalaš, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen
Peer Reviewers Olivier Collin; Wolfgang Mueller
  • Funders
  • Norges Forskningsråd
  • NordForsk
PUBLISHED 29 Jun 2018
https://doi.org/10.12688/f1000research.12391.2
Review metrics
Revised
Recent advances on gradient hydrogels in biomimetic cartilage tissue engineering
[version 2; peer review: 2 approved]
Ivana Gadjanski
Peer Reviewers Stephanie J. Bryant; Matthew J. Dalby
  • Funder
  • Ministry of Education, Science and Technological Development of Republic of Serbia
LATEST VERSION PUBLISHED 28 Jun 2018
https://doi.org/10.12688/f1000research.15436.1
Research Article metrics
Who and why do researchers opt to publish in post-publication peer review platforms? - findings from a review and survey of F1000 Research
[version 1; peer review: 2 approved, 1 approved with reservations]
Jamie Kirkham, David Moher
Peer Reviewers Larry Peiperl; David Mellor; Anisa Rowhani-Farid
PUBLISHED 27 Jun 2018
https://doi.org/10.12688/f1000research.14514.1
Review metrics
Recent advances in understanding inherited disorders of keratinization
[version 1; peer review: 4 approved]
Theodore Zaki, Keith Choate
Peer Reviewers Giovanna Zambruno; Judith Fischer; Nathalie Jonca; Masashi Akiyama
PUBLISHED 27 Jun 2018
https://doi.org/10.12688/f1000research.14298.2
Software Tool Article metrics
Revised
Comparing protein structures with RINspector automation in Cytoscape
[version 2; peer review: 3 approved]
Guillaume Brysbaert, Théo Mauri, Marc F. Lensink
Peer Reviewers Sjoerd J. de Vries; Turkan Haliloglu and Ezgi Karaca; Rita Casadio
LATEST VERSION PUBLISHED 22 Jun 2018
https://doi.org/10.12688/f1000research.15106.1
Research Article metrics
Bibliometrics of the 100 most-cited articles on refugee populations
[version 1; peer review: 1 approved with reservations, 1 not approved]
Musatafa Khosa, Ahmed Waqas, Mahnoor Javaid, Jessica Singh, Sadiq Naveed, Salman Majeed, Faisal Khosa
Peer Reviewers Syed Raza Shah; Samy A Azer
PUBLISHED 22 Jun 2018
https://doi.org/10.12688/f1000research.14470.2
Software Tool Article metrics
Revised
Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
[version 2; peer review: 2 approved]
Robert R. Butler III, Pablo V. Gejman
Peer Reviewers Kai Wang and Gangcai Xie; Amalio Telenti
  • Funder
  • NorthShore University HealthSystem
LATEST VERSION PUBLISHED 20 Jun 2018
https://doi.org/10.12688/f1000research.12093.2
Software Tool Article metrics
Revised
bcbioRNASeq: R package for bcbio RNA-seq analysis
[version 2; peer review: 1 approved, 1 approved with reservations]
Michael J. Steinbaugh, Lorena Pantano, Rory D. Kirchner, Victor Barrera, Brad A. Chapman, Mary E. Piper, Meeta Mistry, Radhika S. Khetani, Kayleigh D. Rutherford, Oliver Hofmann, John N. Hutchinson, Shannan Ho Sui
Peer Reviewers Charlotte Soneson; Davide Risso
LATEST VERSION PUBLISHED 20 Jun 2018
https://doi.org/10.12688/f1000research.15355.1
Editorial metrics NOT PEER REVIEWED
The Cytoscape Automation app article collection
[version 1; peer review: not peer reviewed]
Barry Demchak, David Otasek, Alexander R Pico, Gary D Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H Morris, William Longabaugh, Christian Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker
  • Funders
  • National Resource for Network Biology
  • National Institute of General Medical Sciences
PUBLISHED 20 Jun 2018
https://doi.org/10.12688/f1000research.15168.1
Software Tool Article metrics
Oncoyeasti: a web-based application to translate data obtained from Saccharomyces cerevisiae high-throughput drug screens into cancer therapeutics
[version 1; peer review: 1 approved with reservations, 2 not approved]
Ruby Gupta, Samir Cayenne, Madhu Dyavaiah, Pragnya Srinivas, David Otohinoyi, Debjyoti Talukdar, Moheem Halari, Chidambra Halari, Ashok Ramani, Joshua Yusuf, Khushdeep Chahal, Rupinder Kaur, Ankit Patel, Avaniben Patel, Ravindrasingh Rajput, Harish Siddaiah, Shilpadevi Patil, Ashish Patil, Nikhilesh Anand
Peer Reviewers Ayaz Najafov; Alvaro Galli; Robert J. D. Reid
PUBLISHED 18 Jun 2018
https://doi.org/10.12688/f1000research.13934.2
Software Tool Article metrics
Revised
shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data
[version 2; peer review: 2 approved]
Bhakti Dwivedi, Jeanne Kowalski
Peer Reviewers Yun Zhang; Younghee Lee
  • Funders
  • Winship Cancer Institute of Emory University
  • National Cancer Institute
  • Georgia Research Alliance
LATEST VERSION PUBLISHED 15 Jun 2018
https://doi.org/10.12688/f1000research.14048.2
Research Article metrics
Revised
Predicting ionizing radiation exposure using biochemically-inspired genomic machine learning
[version 2; peer review: 3 approved]
Jonathan Z.L. Zhao, Eliseos J. Mucaki, Peter K. Rogan
Peer Reviewers Daniel Oh; Michael D. Story and Liang-hao Ding; Roel Quintens and Mohamed Mysara
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Canada Excellence Research Chairs, Government of Canada
  • CytoGnomix Inc.
  • Canadian Foundation for Innovation
LATEST VERSION PUBLISHED 15 Jun 2018
https://doi.org/10.12688/f1000research.14966.1
Software Tool Article metrics
iSEE: Interactive SummarizedExperiment Explorer
[version 1; peer review: 3 approved]
Kevin Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T.L. Lun
Peer Reviewers James W. MacDonald; Lorena Pantano; Alejandro Reyes
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Cancer Research UK
PUBLISHED 14 Jun 2018
https://doi.org/10.12688/f1000research.14616.1
Software Tool Article metrics
Automating the PathLinker app for Cytoscape
[version 1; peer review: 2 approved]
Li Jun Huang, Jeffrey N. Law, T. M. Murali
Peer Reviewers Alexander Pico; Stefan Wuchty
  • Funders
  • Intelligence Advanced Research Projects Activity
  • National Science Foundation
PUBLISHED 12 Jun 2018
https://doi.org/10.12688/f1000research.14148.2
Software Tool Article metrics
Revised
segment_liftover : a Python tool to convert segments between genome assemblies
[version 2; peer review: 2 approved]
Bo Gao, Qingyao Huang, Michael Baudis
Peer Reviewers Oscar Krijgsman; Ryan K. Dale
  • Funders
  • China Scholarship Council
  • Universität Zürich
LATEST VERSION PUBLISHED 08 Jun 2018
581-600 of 1,017 ARTICLES
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