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 in 
https://doi.org/10.12688/f1000research.22242.2
Software Tool Article metrics
Revised
AlignmentViewer: Sequence Analysis of Large Protein Families
[version 2; peer review: 2 approved]
Roc Reguant, Yevgeniy Antipin, Rob Sheridan, Christian Dallago, Drew Diamantoukos, Augustin Luna, Chris Sander, Nicholas Paul Gauthier
Peer Reviewers Erik Larsson Lekholm; Alex Bateman
  • Funders
  • Human Frontier Science Program
  • Harvard Medical School
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 15 Oct 2020
https://doi.org/10.12688/f1000research.6348.2
Research Article metrics
Revised
A hydrophobic proclivity index for protein alignments
[version 2; peer review: 2 approved with reservations, 1 not approved]
David Cavanaugh, Krishnan Chittur
Peer Reviewers Charles Carter; Ana Jerončić ; Ruchi Lohia
LATEST VERSION PUBLISHED 15 Oct 2020
https://doi.org/10.12688/f1000research.22907.3
Software Tool Article metrics
Revised
RamaNet: Computational de novo helical protein backbone design using a long short-term memory generative neural network
[version 3; peer review: 5 not approved]
Sari Sabban, Mikhail Markovsky
Peer Reviewers Matias Valdenegro-Toro; Jan Ludwiczak and Stanislaw Dunin-Horkawicz; Anupaul Baruah; Laszlo Dobson; Hamed Khakzad
LATEST VERSION PUBLISHED 12 Oct 2020
https://doi.org/10.12688/f1000research.23883.1
Research Article metrics
Survey to healthcare professionals on the practicality of AI services for healthcare
[version 1; peer review: 1 approved with reservations, 2 not approved]
Antti Väänänen, Keijo Haataja, Pekka Toivanen
Peer Reviewers Parag Chatterjee; Charlotte Blease; Lorenzo Faggioni
  • Funder
  • University of Eastern Finland
PUBLISHED 22 Jul 2020
https://doi.org/10.12688/f1000research.19161.2
Method Article metrics
Revised
Development of an informatics system for accelerating biomedical research.
[version 2; peer review: 2 approved]
Vivek Navale, Michele Ji, Olga Vovk, Leonie Misquitta, Tsega Gebremichael, Alison Garcia, Yang Fann, Matthew McAuliffe
Peer Reviewers Hyeoneui Kim; Timothy W. Clark
LATEST VERSION PUBLISHED 13 Jul 2020
https://doi.org/10.12688/f1000research.22280.2
Software Tool Article metrics
Revised
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
[version 2; peer review: 2 approved]
Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen
Peer Reviewers Magnus Palmblad; Ruth Isserlin
  • Funders
  • Innovationsfonden
  • Novo Nordisk Fonden
LATEST VERSION PUBLISHED 30 Jun 2020
https://doi.org/10.12688/f1000research.21539.5
Method Article metrics
Revised
Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria
[version 5; peer review: 1 approved, 2 approved with reservations]
Colby T. Ford, Daniel Janies
Peer Reviewers Sameer K. Antani; Jeremy Burrows; Alyssa E Barry and Myo Naung
  • Funder
  • University of North Carolina at Charlotte
LATEST VERSION PUBLISHED 25 Jun 2020
https://doi.org/10.12688/f1000research.23694.1
Research Article metrics
COVID-19 countermeasures, Major League Baseball, and the home field advantage: Simulating the 2020 season using logit regression and a neural network
[version 1; peer review: 3 approved with reservations]
Justin Ehrlich, Shankar Ghimire
Peer Reviewers Garry Kuan; Ismail Dergaa; Federico Fioravanti
  • Funder
  • Syracuse University
PUBLISHED 20 May 2020
https://doi.org/10.12688/f1000research.24059.1
Review metrics
Recent advances in the technology of anesthesia
[version 1; peer review: 2 approved]
Christian Seger, Maxime Cannesson
Peer Reviewers Thomas M. Hemmerling; Jan F. A. Hendrickx
  • Funder
  • National Institutes of Health
PUBLISHED 18 May 2020
https://doi.org/10.12688/f1000research.21490.1
Review metrics
Recent advances in understanding mitochondrial genome diversity
[version 1; peer review: 4 approved]
Rafael Zardoya
Peer Reviewers Jianping Xu; Anna Klucnika and Hansong Ma; Michael W Gray; Yongjie Zhang
  • Funder
  • Ministerio de Economía, Industria y Competitividad, Gobierno de España
PUBLISHED 17 Apr 2020
https://doi.org/10.12688/f1000research.19801.3
Software Tool Article metrics
Revised
bwimage: A package to describe image patterns in natural structures
[version 3; peer review: 2 approved]
Carlos Biagolini-Jr., Regina H. Macedo
Peer Reviewers Francesco Chianucci; Roy Francis
  • Funders
  • Conselho Nacional de Desenvolvimento Científico e Tecnológico
  • Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
LATEST VERSION PUBLISHED 14 Apr 2020
https://doi.org/10.12688/f1000research.21576.2
Software Tool Article metrics
Revised
The iCRF Generator: Generating interoperable electronic case report forms using online codebooks
[version 2; peer review: 2 approved, 1 approved with reservations]
Sander de Ridder, Jeroen A.M. Beliën
Peer Reviewers Rianne Fijten and Petros Kalendralis; Martin Dugas; Hugo Leroux
  • Funder
  • KWF Kankerbestrijding
LATEST VERSION PUBLISHED 23 Mar 2020
https://doi.org/10.12688/f1000research.20590.2
Software Tool Article metrics
Revised
Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps
[version 2; peer review: 2 approved]
Michael C. Ryan, Mark Stucky, Chris Wakefield, James M. Melott, Rehan Akbani, John N. Weinstein, Bradley M. Broom
Peer Reviewers Natasha Caplen and Soumya Sundara Rajan; Melissa Cline
  • Funders
  • Michael and Susan Dell Foundation
  • Mary K. Chapman Foundation
  • National Cancer Institute
LATEST VERSION PUBLISHED 19 Mar 2020
https://doi.org/10.12688/f1000research.20082.1
Review metrics
Recent developments in the intervention of specific phobia among adults: a rapid review
[version 1; peer review: 2 approved]
Christabel E.W. Thng, Nikki S.J. Lim-Ashworth, Brian Z.Q. Poh, Choon Guan Lim
Peer Reviewers Azucena Garcia-Palacios; Annelieke Roest
PUBLISHED 19 Mar 2020
https://doi.org/10.12688/f1000research.17319.3
Research Article metrics
Revised
Biometric and genetic differences in kelabau (Osteochilus spp.) as revealed using cytochrome c oxidase subunit 1
[version 3; peer review: 3 approved]
Nur Asiah, Junianto Junianto, Ayi Yustiati, Sukendi Sukendi, Melta Rini Fahmi, Zainal A. Muchlisin, Muhamad Kadapi, Windarti Windarti
Peer Reviewers Indra Junaidi Zakaria; Ja’afar Nuhu Ja’afar; Jayasankar Pallipuram
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
LATEST VERSION PUBLISHED 10 Mar 2020
https://doi.org/10.12688/f1000research.20661.2
Study Protocol metrics
Revised
Using machine learning techniques to develop risk prediction models to predict graft failure following kidney transplantation: protocol for a retrospective cohort study
[version 2; peer review: 2 approved, 1 approved with reservations]
Sameera Senanayake, Adrian Barnett, Nicholas Graves, Helen Healy, Keshwar Baboolal, Sanjeewa Kularatna
Peer Reviewers Ramkiran Gouripeddi; Chenxi Huang; Slade Matthews
  • Funders
  • Queensland University of Technology
  • Department of Education, Australian Governement
LATEST VERSION PUBLISHED 09 Mar 2020
https://doi.org/10.12688/f1000research.22292.2
Software Tool Article metrics
Revised
ccbmlib – a Python package for modeling Tanimoto similarity value distributions
[version 2; peer review: 2 approved]
Martin Vogt, Jürgen Bajorath
Peer Reviewers Brian Goldman; David A. Cosgrove
LATEST VERSION PUBLISHED 05 Mar 2020
https://doi.org/10.12688/f1000research.17751.2
Research Article metrics
Revised
Accuracy of linear measurements obtained from stitched cone beam computed tomography images versus direct skull measurements
[version 2; peer review: 2 approved]
Doaa Ahmed Fouad Hamed, Mostafa Mohamed El Dawlatly, Sahar Hosny El Dessouky, Reham Mohamed Hamdy
Peer Reviewers Luca Fiorillo; Pathawee Khongkhunthian
LATEST VERSION PUBLISHED 02 Mar 2020
https://doi.org/10.12688/f1000research.22361.1
Research Article metrics
Clinical trial
An evaluation of a personalised text message reminder compared to a standard text message on postal questionnaire response rates: an embedded randomised controlled trial
[version 1; peer review: 2 approved]
Ann Cochrane, Charlie Welch, Caroline Fairhurst, Sarah Cockayne, David J. Torgerson, OTIS Study Group
Peer Reviewers Frances Shiely; Phil J. Edwards
  • Funder
  • National Institute for Health Research
PUBLISHED 26 Feb 2020
https://doi.org/10.12688/f1000research.20496.2
Research Article metrics
Revised
Comparison of human population receptive field estimates between scanners and the effect of temporal filtering
[version 2; peer review: 2 approved]
Catherine Morgan, D. Samuel Schwarzkopf
Peer Reviewers Noah Benson; Paola Binda
  • Funders
  • European Research Council
  • University of Auckland
LATEST VERSION PUBLISHED 26 Feb 2020
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