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https://doi.org/10.12688/f1000research.127142.3
Software Tool Article metrics
Revised
Med-ImageTools: An open-source Python package for robust data processing pipelines and curating medical imaging data
[version 3; peer review: 2 approved]
Sejin Kim, Michal Kazmierski, Kevin Qu, Jacob Peoples, Minoru Nakano, Vishwesh Ramanathan, Joseph Marsilla, Mattea Welch, Amber Simpson, Benjamin Haibe-Kains
Peer Reviewers Rachel Sparks; Johann Faouzi
  • Funders
  • Canadian Cancer Society
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 07 Feb 2025
https://doi.org/10.12688/f1000research.159199.1
Research Article metrics
Therapeutic potential of Nigella sativa extract against inflammatory markers interleukin-1ß (IL-1ß) and tumor necrosis factor-α (TNF-α) in rat models with high fat diet
[version 1; peer review: 2 approved with reservations]
Muhammad Ridwan, Nurkhalis Nurkhalis, Fauzul Husna, Dhanang Ali Yafi, Abdurrohman Izzuddin
Peer Reviewers Maha Mahmoud Mohamed; Aisyah Hasyila Jahidin
  • Funder
  • Universitas Syiah Kuala
PUBLISHED 06 Feb 2025
https://doi.org/10.12688/f1000research.155151.2
Research Article metrics
Revised
Do more pregnancies increase the risk of periodontal disease?
[version 2; peer review: 3 approved]
Mohammad Helmi, Eman AlJoghaiman
Peer Reviewers Dr. Talal Shihayb; Nancy Ajwa; Muhammad Anas
LATEST VERSION PUBLISHED 06 Feb 2025
https://doi.org/10.12688/f1000research.142511.2
Research Article metrics
Revised
Epidemiological profiles and causes of sudden deaths of various ages in Ethiopia: an autopsy-based study
[version 2; peer review: 1 approved, 2 approved with reservations]
Alemayehu Shiferaw Lema, Sesen Tsegaye Tekle
Peer Reviewers Lorraine Du Toit-Prinsloo; Martina Modena; Joseph Westaby
LATEST VERSION PUBLISHED 05 Feb 2025
https://doi.org/10.12688/f1000research.160607.1
Brief Report metrics
Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity
[version 1; peer review: 1 approved, 2 approved with reservations]
Nga Quynh Pham, Tam Trang Mai, Tran Bao Anh Dang, Ly Huong Tran, Quynh Mai Vu, Chien Trong Nguyen, Anh Thi Phuong Tran, Tran Nhat Minh Dang, Van Anh Tran, Thinh Huy Tran, Van Khanh Tran, Hoa Quang Le
Peer Reviewers Ilias B Esmagambetov; Jianlong Lou; Charles B Shoemaker
  • Funder
  • Hanoi University of Science and Technology
PUBLISHED 05 Feb 2025
https://doi.org/10.12688/f1000research.144903.3
Review metrics
Revised
Unveiling the Group A Streptococcus Vaccine-Based L-Rhamnose from Backbone of Group A Carbohydrate: Current Insight Against Acute Rheumatic Fever to Reduce the Global Burden of Rheumatic Heart Disease
[version 3; peer review: 2 approved]
Ade Meidian Ambari, Faqrizal Ria Qhabibi, Dwita Rian Desandri, Bambang Dwiputra, Pirel Aulia Baravia, Indira Kalyana Makes, Basuni Radi
Peer Reviewers Arif Nur Muhammad Ansori; Mark Kaddumukasa
LATEST VERSION PUBLISHED 30 Jan 2025
https://doi.org/10.12688/f1000research.158181.1
Research Article metrics
Role of continuous wave vs pulse wave and color doppler in identifying arterial perforators of lower limb
[version 1; peer review: 1 not approved]
Ajit Mahale, Sanyam Khatyal, DEEPAK PINTO, DEEPU VIJAYSENAN, Sonali Ullal, Merwyn Fernandes, Sonali Prabhu, Fathima Raeesa
Peer Reviewers Shuhei Yoshida
  • Funder
  • NO FUNDING
PUBLISHED 28 Jan 2025
https://doi.org/10.12688/f1000research.157851.2
Genome Note metrics
Revised
A reference genome for the eastern bettong (Bettongia gaimardi)
[version 2; peer review: 3 approved]
Luke W Silver, Richard J Edwards, Linda Neaves, Adrian D. Manning, Carolyn J Hogg, Sam Banks
Peer Reviewers Naoki Osada; Jonathan J Hughes; Németh Attila
  • Funder
  • Australian Research Council
LATEST VERSION PUBLISHED 27 Jan 2025
https://doi.org/10.12688/f1000research.158839.1
Research Article metrics
The role of Juniperus Macrocarpa extract as anti-inflammatory and antioxidant on methotrexate-induced acute liver injury in rat model
[version 1; peer review: 1 approved, 2 approved with reservations]
Shahad Hassan Hadi, Mohammed Qasim Yahya Malallah A. Al-Atrakji
Peer Reviewers Ahemed Abu-Raghif; Hayder Ridha-Salman; Yaarub Sadiq
PUBLISHED 27 Jan 2025
https://doi.org/10.12688/f1000research.153244.3
Data Note metrics
Revised
A guide to selecting high-performing antibodies for S1PR1 (UniProt ID: P21453) for use in western blot, immunoprecipitation, and immunofluorescence
[version 3; peer review: 2 approved, 1 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Charles Alende, Sara González Bolívar, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Melissa Pitman; Christian Tiede; Jieya Shao
  • Funders
  • Ontario Genomics
  • Mitacs
  • Genome Quebec
  • Emory-Sage-SGC TaRget Enablement to Accelerate Therapy Development for Alzheimer’s Disease
  • Genome Canada
  • National Institute on Aging
LATEST VERSION PUBLISHED 24 Jan 2025
https://doi.org/10.12688/f1000research.155987.2
Systematic Review metrics
Revised
A systematic review of Streptococcus Mutans and Veillonellae species interactions in dental caries progression: Positive or Negative impact?
[version 2; peer review: 4 approved, 1 not approved]
Faizul Hasan, Hendrik Setia Budi, Rajesh Ramasamy, Tantiana Tantiana, Rini Devijanti Ridwan, Ervina Restiwulan Winoto, Prawati Nuraini, Juni Handajani, Ariadna Adisattya Djais, Silvia Anitasari
Peer Reviewers Yifei Zhang; Zahreni Hamzah and Yani Corvianindya Rahayu; Fidya Fidya; Atik Kurniawati, Yohana Maria Penga and Sari Setyaningsih; Tri Purnami Dewi
  • Funder
  • LPPM Universitas Airlangga
LATEST VERSION PUBLISHED 23 Jan 2025
https://doi.org/10.12688/f1000research.153698.1
Software Tool Article metrics
scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Yan Li, Jason Shapiro, Qiaoshan Lin, Qing Gong, Michiko Ryu, Mengjie Chen
Peer Reviewers Pedro L Baldoni; Sebastiaan Valkiers
  • Funders
  • University of Chicago
  • National Institutes of Health
  • Institute for Translational Medicine
PUBLISHED 20 Jan 2025
https://doi.org/10.12688/f1000research.52799.2
Brief Report metrics
Revised
Klebsiella pneumoniae with capsule type K64 is overrepresented among invasive disease in Vietnam
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Bich Vu Thi Ngoc, Sylvain Brisse, Trinh Dao Tuyet, Dung Vu Tien Viet, Kathryn E Holt, Trung Nguyen Vu, Huong Tran Thi Kieu, Diep Nguyen Thi Ngoc, H Rogier van Doorn, Heiman F L Wertheim
Peer Reviewers John L. Kiley; Frank R. DeLeo; Ning Dong; Neris García-González
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 17 Jan 2025
https://doi.org/10.12688/f1000research.154617.3
Research Article metrics
Revised
Genotoxic effects in island populations of Cartagena de Indias, Colombia due to environmental exposure to mercury and cadmium
[version 3; peer review: 2 approved]
Eder Cano-Pérez, Doris Gómez-Camargo, Dacia Malambo-García
Peer Reviewers Marina Piscopo; Tommaso Filippini
  • Funders
  • Universidad de Cartagena
  • Development Research Centre, Ottawa
LATEST VERSION PUBLISHED 17 Jan 2025
https://doi.org/10.12688/f1000research.151350.2
Systematic Review metrics
Revised
Diagnostic and Prognostic Values of miRNAs in High-Grade Gliomas: A Systematic Review
[version 2; peer review: 2 approved]
Renindra Ananda Aman, Mohammad Galih Pratama, Ricky Rusydi Satriawan, Irfani Ryan Ardiansyah, I Ketut Agus Suanjaya
Peer Reviewers Dessika Rahmawati; Abel Po-Hao Huang
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.73066.2
Genome Note metrics
Revised
A draft genome sequence of the common, or spectacled caiman Caiman crocodilus
[version 2; peer review: 1 approved, 1 not approved]
Kenichi Okamoto, Nichole Dopkins, Elias Kinfu
Peer Reviewers Steven Salzberg; Marc Tollis
  • Funder
  • University of St. Thomas CAS Startup Funds
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.156295.1
Software Tool Article metrics
Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots
[version 1; peer review: 1 approved, 2 approved with reservations]
Isaiah Raspet, Elizabeth Gehret, Chloe Herman, Jeff Meilander, Andrew Manley, Anthony Simard, Evan Bolyen, J Gregory Caporaso
Peer Reviewers Digvijay Verma; Vitor Heidrich; Luke R Thompson
  • Funder
  • National Institutes of Health
PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.159170.1
Genome Note metrics AWAITING PEER REVIEW
Isolation and complete genome sequence of Citrobacter bacteriophage Ursula
[version 1; peer review: awaiting peer review]
A.K. Golomidova, E.E. Kulikov, A.D. Efimov, I.S. Belalov, A.S. Kuznetsov, A.V. Letarov, L.I. Popova
Peer Reviewers Invited
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.20604.4
Brief Report metrics
Revised
Neuronal subset-specific Pten-deficient mice do not exhibit deficits in sensorimotor gating processes
[version 4; peer review: 3 approved]
Matthew S. Binder, Suzanne O. Nolan, Joaquin N. Lugo
Peer Reviewers Benjamin K. Yee; Maarten van den Buuse; George Leondaritis and Charalampos Brakatselos
  • Funders
  • National Institute of Neurological Disorders and Stroke
  • Baylor University
LATEST VERSION PUBLISHED 14 Jan 2025
https://doi.org/10.12688/f1000research.157911.1
Systematic Review metrics AWAITING PEER REVIEW
Systematic review and meta-analysis of the occurrence of Listeria monocytogenes in fresh produce in selected developing countries
[version 1; peer review: awaiting peer review]
Opeyemi K. Fatunla, Anthony A. Adegoke, Utibe A. Ofon, Olayinka A. Aiyegoro
Peer Reviewers Invited
  • Funder
  • Nigerian National Research Fund (NRF)
PUBLISHED 10 Jan 2025
121-140 of 4,523 ARTICLES
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