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https://doi.org/10.12688/f1000research.124416.1
Research Article metrics
HLA class I and discoveries of the HLA-K (pseudogene) related to disease severity and progression in patients with spondyloarthritis in Dr. Soetomo General Hospital, a tertiary health care center in Surabaya, Indonesia
[version 1; peer review: 1 approved, 1 not approved]
Yuliasih ., Nabilatun Nisa', Lita Diah Rahmawati, Cahaya Prastayudha
Peer Reviewers Jose Antonio Pinto-Tasende; James McCluskey
PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.125163.1
Review metrics
cGAS-STING pathway targeted therapies and their applications in the treatment of high-grade glioma
[version 1; peer review: 3 approved]
Shashwat Tripathi, Hinda Najem, Akanksha Sanjay Mahajan, Peng Zhang, Justin T Low, Alexander H Stegh, Michael A Curran, David M Ashley, Charles David James, Amy B Heimberger
Peer Reviewers Marcin Kortylewski; Edjah K. Nduom; Maria G. Castro
  • Funders
  • Charlie Teo Foundation
  • National Institutes of Health
PUBLISHED 07 Sep 2022
https://doi.org/10.12688/f1000research.51749.2
Method Article metrics
Revised
satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications
[version 2; peer review: 2 approved]
Jeroen Gilis, Kristoffer Vitting-Seerup, Koen Van den Berge, Lieven Clement
Peer Reviewers Marek Cmero; Alejandro Reyes
  • Funders
  • Belgian American Educational Foundation
  • Fonds Wetenschappelijk Onderzoek
LATEST VERSION PUBLISHED 08 Aug 2022
https://doi.org/10.12688/f1000research.121980.1
Research Article metrics
Next-generation sequencing (NGS) reveals low-abundance HIV-1 drug resistance mutations among patients experiencing virological failure at the time of therapy switching in Uganda
[version 1; peer review: 1 approved with reservations]
Maria Magdalene Namaganda, Hakim Sendagire, David Patrick Kateete, Edgar Kigozi, Moses Luutu Nsubuga, Fred Ashaba Katabazi, Jupiter Marina Kabahita, Fredrick Elishama Kakembo, Stephen Kanyerezi, Barbara Castelnuovo, Andrew Kambugu, Isaac Ssewanyana, Chris Okirya, Susan Nabadda, Moses Joloba, Gerald Mboowa
Peer Reviewers Pascal O. Bessong
  • Funders
  • The Africa Center of Excellence in Materials, Product Development and Nanotechnology (MAPRONANO ACE)
  • Fogarty International Center of the National Institutes of Health
  • Nurturing Genomics and Bioinformatics Research Capacity in Africa (BRecA)
  • Health Professions Education and Training for Strengthening the Health System and Services in Uganda (HEPI-SHSSU)
PUBLISHED 04 Aug 2022
https://doi.org/10.12688/f1000research.123884.1
Study Protocol metrics
The burden of BRCA1 and BRCA2 gene mutations among Vietnamese women and their associated factors: A protocol for a systematic review and meta-analysis
[version 1; peer review: 1 not approved]
Phuc Thai Tran, Duc Quang Tran, Chi Thi Quynh Vu, Quang Ngoc Phan, Anh Thi Thu Nguyen
Peer Reviewers Weang Kee Ho and Boon Hong Ang
PUBLISHED 28 Jul 2022
https://doi.org/10.12688/f1000research.122113.1
Method Article metrics
Interactive visualization of spatial omics neighborhoods
[version 1; peer review: 2 approved with reservations]
Tinghui Xu, Kris Sankaran
Peer Reviewers Guangdun Peng and Miao Zhu; Oscar Ospina
PUBLISHED 18 Jul 2022
https://doi.org/10.12688/f1000research.75471.3
Correspondence metrics
Revised
Positional weight matrices have sufficient prediction power for analysis of noncoding variants
[version 3; peer review: 2 approved]
Alexandr Boytsov, Sergey Abramov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Peer Reviewers Victor G. Levitsky; Philip Machanick
  • Funder
  • Russian Science Foundation
LATEST VERSION PUBLISHED 04 Jul 2022
https://doi.org/10.12688/f1000research.121927.1
Research Article metrics
Intrapartum care intervention fidelity and factors associated with it in South Wollo Administrative Zone, Northeast Ethiopia.
[version 1; peer review: 2 approved with reservations]
Asressie Molla, Dr Abebaw Gebeyehu, Professor Solomon Mekonnen, Professor Kassahun ALemu, Dr Zemene Tigabu
Peer Reviewers Abrham Debeb Sendekie; Jenny Jung
  • Funder
  • University o Gondar
PUBLISHED 28 Jun 2022
https://doi.org/10.12688/f1000research.53842.2
Opinion Article metrics
Revised
Python for gene expression
[version 2; peer review: 2 approved]
Leonid Bystrykh
Peer Reviewers Sergio Peignier; Yasha Hasija
LATEST VERSION PUBLISHED 23 Jun 2022
https://doi.org/10.12688/f1000research.53214.4
Research Article metrics
Revised
Discrimination of the SARS–CoV-2 strains using of coloured s-LASCA-imaging of GB-speckles, developed for the gene “S” nucleotide sequences
[version 4; peer review: 2 approved, 1 approved with reservations]
Onega Ulianova, Yury Saltykov, Sergey Ulyanov, Sergey Zaytsev, Alexander Ulyanov, Valentina Feodorova
Peer Reviewers Oleg Angelsky; Alexey Bashkatov and Claudia Zenkova; Dmitry A. Zimnyakov
  • Funder
  • Russian Foundation for Basic Research
LATEST VERSION PUBLISHED 22 Jun 2022
https://doi.org/10.12688/f1000research.28033.2
Software Tool Article metrics
Revised
HGNChelper: identification and correction of invalid gene symbols for human and mouse
[version 2; peer review: 3 approved]
Sehyun Oh, Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis, Markus Riester, Levi Waldron
Peer Reviewers Mikhail G. Dozmorov; Susan Tweedie; Marcin Cieślik
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 09 Jun 2022
https://doi.org/10.12688/f1000research.121637.1
Genome Note metrics
The complete genome sequence of elite bread wheat cultivar, “Sonmez”
[version 1; peer review: 3 approved]
Bala Ani Akpinar, Philippe Leroy, Nathan Watson-Haigh, Ute Baumann, Valerie Barbe, Hikmet Budak
Peer Reviewers Søren K. Rasmussen; Zahide Neslihan Öztürk Gökçe; Gabriel Doredo Perez
  • Funder
  • Budak Family Foundation (BFF)
PUBLISHED 06 Jun 2022
https://doi.org/10.12688/f1000research.121706.1
Genome Note metrics
Genome of the lepidopleurid chiton Hanleya hanleyi (Mollusca, Polyplacophora)
[version 1; peer review: 2 approved]
Rebecca M. Varney, Meghan K. Yap-Chiongco, Nina T. Mikkelsen, Kevin M. Kocot
Peer Reviewers Vanessa L. Gonzalez; Samuel Abalde
  • Funders
  • The Norwegian Biodiversity Information Centre
  • National Science Foundation
PUBLISHED 23 May 2022
https://doi.org/10.12688/f1000research.109080.2
Opinion Article metrics
Revised
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
[version 2; peer review: 2 approved]
Sebastian Beier, Anne Fiebig, Cyril Pommier, Isuru Liyanage, Matthias Lange, Paul J. Kersey, Stephan Weise, Richard Finkers, Baron Koylass, Timothee Cezard, Mélanie Courtot, Bruno Contreras-Moreira, Guy Naamati, Sarah Dyer, Uwe Scholz
Peer Reviewers Boas Pucker and Alenka Hafner; Micha M. Bayer
  • Funders
  • ELIXIR
  • Bundesministerium für Bildung und Forschung
  • Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 19 May 2022
https://doi.org/10.12688/f1000research.26709.2
Research Article metrics
Revised
Thank Martin Luther that ciprofloxacin could cure your gonorrhoea? Ecological association between Protestantism and antimicrobial consumption in 30 European countries
[version 2; peer review: 1 approved, 2 approved with reservations]
Chris Kenyon, Geoffrey Fatti
Peer Reviewers Christoph M. Tang; Peter J Collignon; Harvey Morgan Scott
LATEST VERSION PUBLISHED 06 May 2022
https://doi.org/10.12688/f1000research.110726.1
Research Article metrics
Associations among smoking, IDH mutations, MGMT promoter methylation, and grading in glioma: a cross-sectional study
[version 1; peer review: 1 approved with reservations, 1 not approved]
Rusdy Ghazali Malueka, Rachmat Andi Hartanto, Maria Alethea, Christina Megawimanti Sianipar, Adiguno Suryo Wicaksono, Endro Basuki, Kusumo Dananjoyo, Ahmad Asmedi, Ery Kus Dwianingsih
Peer Reviewers I. Putu Eka Widyadharma; Alberto Picca
  • Funder
  • PDUPT Grant from the Indonesian Ministry of Education, Culture, Research, and Technology
PUBLISHED 29 Apr 2022
https://doi.org/10.12688/f1000research.108549.1
Genome Note metrics PEER REVIEW DISCONTINUED
The complete genome sequences of Erythroxylum coca and Erythroxylum novogranatense
[version 1; peer review: peer review discontinued]
Dawson M. White, Lyndel Meinhardt, Bryan Bailey, Stacy Pirro
Peer Reviewers Invited
  • Funder
  • IRIDIAN GENOMES
PUBLISHED 25 Apr 2022
https://doi.org/10.12688/f1000research.110799.1
Genome Note metrics
The complete mitochondrial genome sequencing of the Asian lesser white-toothed shrew (Crocidura shantungensis Miller, 1901; Eulipotyphla: Soricidae) from Jeju of Korea
[version 1; peer review: 2 approved with reservations]
Seo-Jin Lee, Dong-Hee Kim, Hang Lee
Peer Reviewers Rogelio Rosas-Valdez; Sadık Demirtaş
  • Funder
  • National Research Foundation of Korea
PUBLISHED 22 Apr 2022
https://doi.org/10.12688/f1000research.51018.2
Brief Report metrics
Revised
Overlap of vitamin A and vitamin D target genes with CAKUT-related processes
[version 2; peer review: 2 approved, 2 approved with reservations]
Ozan Ozisik, Friederike Ehrhart, Chris T. Evelo, Alberto Mantovani, Anaı̈s Baudot
Peer Reviewers Elena Menegola; Matias Simons; Olivia Angelin-Bonnet; Sean Eddy
  • Funders
  • Horizon 2020
  • The Excellence Initiative of Aix-Marseille University - A*Midex
LATEST VERSION PUBLISHED 21 Apr 2022
https://doi.org/10.12688/f1000research.110936.1
Research Article metrics
TReNCo: Topologically associating domain (TAD) aware regulatory network construction
[version 1; peer review: 2 not approved]
Christopher Bennett, Viren Amin, Daehwan Kim, Murat Can Cobanoglu, Venkat Malladi
Peer Reviewers Junbai Wang; Sonika Tyagi
  • Funders
  • National Institute of General Medical Sciences
  • Cancer Prevention and Research Institute of Texas
PUBLISHED 14 Apr 2022
141-160 of 2,038 ARTICLES
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