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https://doi.org/10.12688/f1000research.52478.1
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Regulatory landscapes of specific miRNAs are conserved between cell lines and primary tumors
[version 1; peer review: 1 approved, 1 approved with reservations]
Hanwen Zhu, Boting Ning
Peer Reviewers Chongzhi Zang; Vinayak C. Palve
PUBLISHED 22 Jul 2021
https://doi.org/10.12688/f1000research.21809.1
Review metrics
Chromatin dynamics at the maternal to zygotic transition: recent advances from the zebrafish model
[version 1; peer review: 2 approved]
Bagdeser Akdogan-Ozdilek, Katherine L Duval, Mary G Goll
Peer Reviewers Mary C. Mullins; Christopher L. Sansam
  • Funder
  • National Institute of General Medical Sciences
PUBLISHED 28 Apr 2020
https://doi.org/10.12688/f1000research.21366.1
Review metrics
Recent advances in epilepsy genomics and genetic testing
[version 1; peer review: 2 approved]
Malavika Hebbar, Heather C. Mefford
Peer Reviewers Josemir W. Sander; Weiping Liao
  • Funder
  • None
PUBLISHED 12 Mar 2020
https://doi.org/10.12688/f1000research.21362.1
Review metrics
The B-side of Xist
[version 1; peer review: 3 approved]
Asun Monfort, Anton Wutz
Peer Reviewers Marnie E. Blewitt; Michael Sattler and Alisha Jones; Takashi Sado
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
PUBLISHED 28 Jan 2020
https://doi.org/10.12688/f1000research.21180.1
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LEAFY COTYLEDONs: old genes with new roles beyond seed development
[version 1; peer review: 2 approved]
De Niu, Yuehui He
Peer Reviewers Loïc Lepiniec; Miriam Calonje Macaya
  • Funders
  • Chinese Academy of Sciences
  • National Natural Science Foundation of China
PUBLISHED 27 Dec 2019
https://doi.org/10.12688/f1000research.20179.1
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Recent advances in developing disease resistance in plants
[version 1; peer review: 2 approved]
Anuj Sharma, Jeffrey B. Jones, Frank F. White
Peer Reviewers Zuhua He; Magdy M Mahfouz
  • Funders
  • Gates Foundation
  • National Science Foundation
PUBLISHED 19 Nov 2019
https://doi.org/10.12688/f1000research.18211.1
Review metrics
Stability and flexibility in chromatin structure and transcription underlies memory CD8 T-cell differentiation
[version 1; peer review: 2 approved]
Huitian Diao, Matthew Pipkin
Peer Reviewers Axel Kallies; Peter N Cockerill
  • Funders
  • U.S. Department of Defense
  • National Institutes of Health
PUBLISHED 31 Jul 2019
https://doi.org/10.12688/f1000research.18158.1
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A period without PER: understanding 24-hour rhythms without classic transcription and translation feedback loops
[version 1; peer review: 2 approved]
Arthur Millius, Koji L. Ode, Hiroki R. Ueda
Peer Reviewers John O'Neill; Carrie L. Partch
  • Funders
  • Japan Agency for Medical Research and Development
  • RIKEN
  • Ministry of Education, Culture, Sports, Science and Technology
  • Japan Society for the Promotion of Science
PUBLISHED 16 Apr 2019
https://doi.org/10.12688/f1000research.17358.1
Review metrics
New insights emerge as antibody repertoire diversification meets chromosome conformation
[version 1; peer review: 3 approved]
Amy L. Kenter, Ann J. Feeney
Peer Reviewers Craig H Bassing; Harry W Schroeder; Yehudit Bergman
  • Funder
  • NIH
PUBLISHED 28 Mar 2019
https://doi.org/10.12688/f1000research.17207.1
Review metrics
Recent advances in gene function prediction using context-specific coexpression networks in plants
[version 1; peer review: 2 approved]
Chirag Gupta, Andy Pereira
Peer Reviewers Ross Sozzani and Natalie Clark; Marek Mutwil
  • Funder
  • National Science Foundation
PUBLISHED 05 Feb 2019
https://doi.org/10.12688/f1000research.9005.3
Software Tool Article metrics
Revised
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
[version 3; peer review: 3 approved]
Charity W. Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon K. Smyth, Matthew E. Ritchie
Peer Reviewers James W. MacDonald; Maria A. Doyle; Jovana Maksimovic
  • Funders
  • Australian Government NHMRC IRIISS
  • State Government Operational Infrastructure Support
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 28 Dec 2018
https://doi.org/10.12688/f1000research.16755.1
Review metrics
Dissecting diffuse large B-cell lymphomas of the “not otherwise specified” type: the impact of molecular techniques
[version 1; peer review: 2 approved]
Stefano A Pileri, Enrico Derenzini, Federica Melle, Giovanna Motta, Angelica Calleri, Pierluigi Antoniotti, Virginia Maltoni, Sebastiano Spagnolo, Stefano Fiori, Valentina Tabanelli, Marco Fabbri
Peer Reviewers Ken H Young; David M Aboulafia
  • Funder
  • Italian Association for Cancer Research (AIRC)
PUBLISHED 21 Dec 2018
https://doi.org/10.12688/f1000research.15809.2
Research Article metrics
Revised
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data
[version 2; peer review: 3 approved]
Saskia Freytag, Luyi Tian, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo
Peer Reviewers Joshua W. K. Ho; Shila Ghazanfar; Stephanie C Hicks
  • Funder
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.16146.1
Review metrics
RNA interactomics: recent advances and remaining challenges
[version 1; peer review: 2 approved]
Brigitte Schönberger, Christoph Schaal, Richard Schäfer, Björn Voß
Peer Reviewers Roland Hartmann; Lennart Randau
  • Funder
  • Bundesministerium für Bildung und Forschung
PUBLISHED 20 Nov 2018
https://doi.org/10.12688/f1000research.16079.1
Review metrics
Breaking point: the genesis and impact of structural variation in tumours
[version 1; peer review: 2 approved]
Ailith Ewing, Colin Semple
Peer Reviewers Jianmin Wang; Javier Herrero
  • Funders
  • UKRI Innovation Fellowship
  • UK Medical Research Council (MRC)
PUBLISHED 19 Nov 2018
https://doi.org/10.12688/f1000research.15695.1
Review metrics
Role of alarmin cytokines and microRNAs in the host-schistosome interaction
[version 1; peer review: 3 approved]
Xing He, Weiqing Pan
Peer Reviewers Geoffrey N Gobert; Hui Fen Dong; Bolaji Thomas
  • Funder
  • National Natural Science Foundation of China
PUBLISHED 28 Sep 2018
https://doi.org/10.12688/f1000research.15271.1
Review metrics
Regulatory network characterization in development: challenges and opportunities
[version 1; peer review: 2 approved]
Guangdun Peng, Jing-Dong J. Han
Peer Reviewers Volkhard Helms; GuoCheng Yuan
  • Funders
  • Chinese Academy of Sciences
  • National Natural Science Foundation of China
  • China Ministry of Science and Technology
PUBLISHED 17 Sep 2018
https://doi.org/10.12688/f1000research.15258.1
Review metrics
Recent advances in understanding the role of FOXO3
[version 1; peer review: 4 approved]
Renae J. Stefanetti, Sarah Voisin, Aaron Russell, Séverine Lamon
Peer Reviewers Saghi Ghaffari; Bradley J. Willcox; Wolfgang Link; Boudewijn M. T. Burgering
PUBLISHED 31 Aug 2018
https://doi.org/10.12688/f1000research.13842.1
Review metrics
Enhancer functions in three dimensions: beyond the flat world perspective
[version 1; peer review: 3 approved]
Anita Göndör, Rolf Ohlsson
Peer Reviewers Walter Schaffner; Melissa J Fullwood; Philippe Collas
PUBLISHED 30 May 2018
https://doi.org/10.12688/f1000research.13865.1
Review metrics
Genomics of autism spectrum disorder: approach to therapy
[version 1; peer review: 3 approved]
Fatma Ayhan, Genevieve Konopka
Peer Reviewers Alysson R. Muotri; M. Chiara Manzini; Laia Rodriguez-Revenga
  • Funders
  • Simons Foundation
  • National Institute on Deafness and Other Communication Disorders
  • National Institute of Mental Health
  • James S. McDonnell Foundation
  • National Institute on Drug Abuse
PUBLISHED 22 May 2018
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