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https://doi.org/10.12688/f1000research.167441.1
Systematic Review metrics AWAITING PEER REVIEW
Impact of antibiotics on the genomic expression of Pseudomonas aeruginosa in the East African community: a systematic review
[version 1; peer review: awaiting peer review]
Comfort Danchal Vandu, Ilemobayo Victor Fasogbon, Angela Mumbua Musyoka, Abdulganiy Babatunde Agbaje, Anyanwu Chinyere Njideka, Wusa Makena, Emmanuel O. Ikuomola, Reuben Samson Dangana, Nancy B. Mitaki, Ibe Micheal Usman, Augustine Oviosun, Herbert Mbyemeire, Elizabeth Umoren, Shango Patience Emmanuel Jakheng, Solomon A Mbina, Esther Ugo Alum, Ibrahim Babangida Abubarkar, Swase Dominic Terkimbi, Siida Robert, Patrick Maduabuchi Aja, Ezra Agwu
Peer Reviewers Invited
  • Funder
  • NA
PUBLISHED 19 Sep 2025
https://doi.org/10.12688/f1000research.163701.2
Genome Note metrics
Revised
Reference genome and reproduction-focused transcriptome for the threatened alpine tree frog (Litoria verreauxii alpina)
[version 2; peer review: 2 approved]
Alexander S. Wendt, Laura Brannelly
Peer Reviewers Yanbo Sun; Martin Knytl
  • Funders
  • American Australian Association
  • University of Melbourne
  • Australian Research Council
LATEST VERSION PUBLISHED 02 Sep 2025
https://doi.org/10.12688/f1000research.168786.1
Software Tool Article metrics
Identification of Viral Variants from Functional Genomics Data
[version 1; peer review: 1 approved with reservations]
Florian Röckl, Caroline C. Friedel
Peer Reviewers Dóra Tombácz
  • Funder
  • Deutsche Forschungsgemeinschaft
PUBLISHED 18 Aug 2025
https://doi.org/10.12688/f1000research.163843.1
Research Article metrics
Differences between human male and female neutrophils with respect to which RNAs are present in polysomes
[version 1; peer review: 1 not approved]
Darrell Pilling, Kristen M. Consalvo, Sara A. Kirolos, Richard H. Gomer
Peer Reviewers Sebastian Korste
  • Funder
  • National Institutes of Health
PUBLISHED 30 May 2025
https://doi.org/10.12688/f1000research.145171.2
Research Article metrics
Revised
Tumor-driven stromal reprogramming in the pre-metastatic lymph node
[version 2; peer review: 1 approved, 1 approved with reservations]
Michelle Piquet, David A Ruddy, Viviana Cremasco, Jonathan Chang
Peer Reviewers Sanjiv Luther; Christopher McGinnis
LATEST VERSION PUBLISHED 10 Apr 2025
https://doi.org/10.12688/f1000research.160250.3
Research Article metrics
Revised
Diversity, Distribution, and Phenotypic Characterization of Cultivable Wild Yeasts Isolated from Natural Forest
[version 3; peer review: 2 approved]
Teshome Tadesse, Degife Dese, Anbessa Dabassa, Ketema Bacha
Peer Reviewers Pablo Villarreal; Lydia R Heasley
  • Funder
  • Jimma University
LATEST VERSION PUBLISHED 08 Apr 2025
https://doi.org/10.12688/f1000research.158856.1
Research Article metrics
Whole Genome Characterization of Potential Isolates for Next-Generation SARS-CoV-2 Vaccine Development Utilizing Structural Protein of Multiple Variants
[version 1; peer review: 1 approved with reservations]
Diyantoro Diyantoro, Fedik Abdul Rantam, Juniastuti Juniastuti, Andy Yasmin Wijaya, Helen Susilowati, Suryo Kuncorojakti, Ahmad Aswin, Firdausy Kurnia Maulana
Peer Reviewers Kanwal Khalid
  • Funder
  • Education Funding Institution (LPDP) and the Education Funding Service Center (BPPT)
PUBLISHED 21 Mar 2025
https://doi.org/10.12688/f1000research.143928.3
Data Note metrics
Revised
A guide to selecting high-performing antibodies for Rab1A and Rab1B for use in Western Blot, immunoprecipitation and immunofluorescence
[version 3; peer review: 2 approved]
Vera Ruíz Moleón, Charles Alende, Maryam Fotouhi, Riham Ayoubi, Sara González Bolívar, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Shinsuke Niwa; Claudia Fallini
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Mitacs
  • Genome Québec
  • Genome Canada
LATEST VERSION PUBLISHED 07 Mar 2025
https://doi.org/10.12688/f1000research.160607.1
Brief Report metrics
Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity
[version 1; peer review: 1 approved, 2 approved with reservations]
Nga Quynh Pham, Tam Trang Mai, Tran Bao Anh Dang, Ly Huong Tran, Quynh Mai Vu, Chien Trong Nguyen, Anh Thi Phuong Tran, Tran Nhat Minh Dang, Van Anh Tran, Thinh Huy Tran, Van Khanh Tran, Hoa Quang Le
Peer Reviewers Ilias B Esmagambetov; Jianlong Lou; Charles B Shoemaker
  • Funder
  • Hanoi University of Science and Technology
PUBLISHED 05 Feb 2025
https://doi.org/10.12688/f1000research.52799.2
Brief Report metrics
Revised
Klebsiella pneumoniae with capsule type K64 is overrepresented among invasive disease in Vietnam
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Bich Vu Thi Ngoc, Sylvain Brisse, Trinh Dao Tuyet, Dung Vu Tien Viet, Kathryn E Holt, Trung Nguyen Vu, Huong Tran Thi Kieu, Diep Nguyen Thi Ngoc, H Rogier van Doorn, Heiman F L Wertheim
Peer Reviewers John L. Kiley; Frank R. DeLeo; Ning Dong; Neris García-González
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 17 Jan 2025
https://doi.org/10.12688/f1000research.159170.1
Genome Note metrics AWAITING PEER REVIEW
Isolation and complete genome sequence of Citrobacter bacteriophage Ursula
[version 1; peer review: awaiting peer review]
A.K. Golomidova, E.E. Kulikov, A.D. Efimov, I.S. Belalov, A.S. Kuznetsov, A.V. Letarov, L.I. Popova
Peer Reviewers Invited
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.155356.2
Study Protocol metrics
Revised
Muscarinic receptor agonists and positive allosteric modulators in animal models of psychosis: protocol for a systematic review and meta-analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Spyridon Siafis, Nobuyuki Nomura, Johannes Schneider-Thoma, Irene Bighelli, Alexandra Bannach-Brown, Fiona J. Ramage, Francesca Tinsdeall, Ioannis Mantas, Sameer Jauhar, Sridhar Natesan, Anthony C. Vernon, Andrea de Bartolomeis, Sabine M. Hölter, Natascha I. Drude, Ulf Tölch, Wulf-Peter Hansen, Virginia Chiocchia, Oliver D. Howes, Josef Priller, Malcolm R. Macleod, Georgia Salanti, Stefan Leucht
Peer Reviewers Daniel Foster; William Messer; Xiaonan Guo
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Medical Research Council-UK
  • Federal Ministry of Education and Research
  • Wellcome Trust
LATEST VERSION PUBLISHED 02 Jan 2025
https://doi.org/10.12688/f1000research.141669.2
Review metrics
Revised
Exploring the anti-aging potential of natural products and plant extracts in budding yeast Saccharomyces cerevisiae: A review
[version 2; peer review: 2 approved, 3 approved with reservations]
Phaniendra Alugoju, Chella Perumal Palanisamy, Naga Venkata Anusha Anthikapalli, Selvaraj Jayaraman, Anchalee Prasanskulab, Siriporn Chuchawankul, Madhu Dyavaiah, Tewin Tencomnao
Peer Reviewers Srinivasa Rao Sirasanagandla; John Hartman; Marco Eigenfeld; Hemagirri Manisekaran; Weiwei Dang
  • Funder
  • Chulalongkorn University
LATEST VERSION PUBLISHED 17 Dec 2024
https://doi.org/10.12688/f1000research.123181.3
Research Article metrics
Revised
Structural and Functional Implications of Polyarginine Addition to Green Fluorescent Protein Expression in Saccharomyces cerevisiae INVSc1
[version 3; peer review: 5 not approved]
Shania Safera Tandio Saputro, Khayu Wahyunita, Astutiati Nurhasanah, Yudhi Nugraha, Irvan Faizal, Sabar Pambudi, Syahputra Wibowo, Andri Pramesyanti Pramono
Peer Reviewers Khomaini Hasan; Hisao Moriya; Stéphane Guyot; Yide Huang; Francine M Perrine-Walker
  • Funder
  • The works were financially supported by the Universitas Pembangunan Nasional Veteran Jakarta, DRPM Grant from Kemendikbud.
LATEST VERSION PUBLISHED 25 Nov 2024
https://doi.org/10.12688/f1000research.157145.1
Research Article metrics AWAITING PEER REVIEW
Eosinophilia and Leucocytic DNA damage
[version 1; peer review: awaiting peer review]
Yim Tong Szeto
Peer Reviewers Invited
  • Funder
  • Tung Wah College
PUBLISHED 11 Oct 2024
https://doi.org/10.12688/f1000research.153243.2
Data Note metrics
Revised
A guide to selecting high-performing antibodies for CSNK2A1 (UniProt ID: P68400) for use in western blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 1 approved, 2 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Charles Alende, Vera Ruíz Moleón, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF consortium
Peer Reviewers Odile Filhol and Catherine Pillet; David Litchfield; Miwako Homma
  • Funders
  • Ontario Genomics
  • from Canadian Institutes of Health Research Foundation
  • Simons Foundation Autism Research Initiative
  • Mitacs
  • Genome Quebec
  • Genome Canada
LATEST VERSION PUBLISHED 05 Sep 2024
https://doi.org/10.12688/f1000research.148400.1
Review metrics AWAITING PEER REVIEW
A comprehensive review on epigenetic and epitranscriptomic-mediated regulation of antibiotic resistance
[version 1; peer review: awaiting peer review]
Pankaj Kumar Giri, Shahil Alam, Madhav Dhakal
Peer Reviewers Invited
  • Funders
  • Science and Engineering Research Board
  • Department of Biotechnology, Ministry of Science and Technology, India
PUBLISHED 24 Jul 2024
https://doi.org/10.12688/f1000research.132628.2
Data Note metrics
Revised
The identification of high-performing antibodies for Sequestosome-1 for use in Western blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 2 approved]
Riham Ayoubi, Walaa Alshafie, Irina Shlaifer, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group
Peer Reviewers Yasukazu Takanezawa; Guoqiang Xu
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • ALS Society of Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Genome Quebec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 10 Jul 2024
https://doi.org/10.12688/f1000research.140456.3
Data Note metrics
Revised
Identification of high-performing antibodies for tyrosine-protein kinase SYK for use in Western Blot, immunoprecipitation and immunofluorescence
[version 3; peer review: 2 approved]
Walaa Alshafie, Maryam Fotouhi, Riham Ayoubi, Kathleen Southern, Carl Laflamme, NeuroSGC/YCharOS collaborative group
Peer Reviewers Kiyonao Sada; Araujo Nelson A
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Genome Quebec
  • Mitacs
  • Genome Canada
  • National Institute on Aging
LATEST VERSION PUBLISHED 11 Jun 2024
https://doi.org/10.12688/f1000research.123984.2
Research Article metrics
Revised
A potential role of arcadia in conditioned media - umbilical cord derived mesenchymal stem cell on  cartilage repair
[version 2; peer review: 1 approved with reservations, 3 not approved]
Bintang Soetjahjo, Denny Adriansyah, Wibi Riawan
Peer Reviewers William Mark Erwin; Girish Pattappa; Rajesh Ramasamy; Jeanne Adiwinata Pawitan
LATEST VERSION PUBLISHED 06 Jun 2024
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