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        https://doi.org/10.12688/f1000research.156917.2
        
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            Joseph Chan,        
        
            Daisy Sheng,        
        
            Alfredo González-Espinoza,        
        
            Christopher Warren       
        
            
                    
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    Benjamin Antunes;
    Teresa Gomez-Diaz                and    Tomas Recio;
    Stephen J Eglen                    
            
                
        
        
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    German Demidov;
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 PUBLISHED 27 Jun 2024
        
     
    
    
        https://doi.org/10.12688/f1000research.138059.1
        
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    Bhavesh Patel;
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 PUBLISHED 08 Jan 2024
        
     
    
    
        https://doi.org/10.12688/f1000research.110194.1
        
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    Rodolfo Aramayo;
    Nguyen Quoc Khanh Le;
    Pedro G. Ferreira;
    Quan Long                    
            
                    
               
                    - Funders
 
                     - 
                       National Library of Medicine
                     
 
                     - 
                       Swiss National Science Foundation
                     
 
                     - 
                       USDA Agricultural Research Service HQ Research Associate program in Big Data
                     
 
                     - 
                       Centers for Disease Control and Prevention through the Association of Public Health Laboratories
                     
 
                     - 
                       ALS Association Milton Safenowitz Research
                     
 
                     - 
                       The Research Council of Norway
                     
 
                     - 
                       Large Facilities Office
                     
 
                     - 
                       China Scholarship Council PhD scholarship
                     
 
                     - 
                       NIHR Maudsley Biomedical Research Centre
                     
 
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                       The Motor Neurone Disease Association
                     
 
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                       FWO
                     
 
                
             
        
        
        
 PUBLISHED 16 May 2022
        
     
    
    
        https://doi.org/10.12688/f1000research.26452.1
        
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    Rick Stevens                and    James Davis;
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                     - 
                       Fundação para a Ciência e a Tecnologia
                     
 
                     - 
                       Scientific and Technological Research Council of Turkey
                     
 
                     - 
                       Intramural Research Program of the National Library of Medicine
                     
 
                
             
        
        
        
 PUBLISHED 09 Feb 2022
        
     
    
    
        https://doi.org/10.12688/f1000research.75071.1
        
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    Tao Zeng;
    Karim Fouad                and    Abel Torres-Espin;
    Angela Pinot de Moira                    
            
                
        
        
 PUBLISHED 31 Jan 2022
        
     
    
    
        https://doi.org/10.12688/f1000research.73492.1
        
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 PUBLISHED 09 Nov 2021
        
     
    
    
        https://doi.org/10.12688/f1000research.73018.1
        
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        AQUA: an Advanced QUery Architecture for the SPARC Portal
    
      
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 PUBLISHED 16 Sep 2021
        
     
    
    
        https://doi.org/10.12688/f1000research.51477.2
        
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    Francois Sabot;
    Kamil S. Jaron;
    Ricardo Assunção Vialle;
    Loren L. Flynn                    
            
                    
               
                    - Funders
 
                     - 
                       NIH/NICHD
                     
 
                     - 
                       C3.ai Digital Transformation Institute COVID-19 award
                     
 
                     - 
                       Intramural Research Program of the National Library of Medicine
                     
 
                     - 
                       NHMRC
                     
 
                     - 
                       Intramural Research Program of NHGRI
                     
 
                     - 
                       NIHR Maudsley Biomedical Research Centre
                     
 
                     - 
                       NIH
                     
 
                     - 
                       The Motor Neurone Disease Association
                     
 
                     - 
                       FWO
                     
 
                
             
        
        
        
 LATEST VERSION  PUBLISHED 03 Sep 2021
        
     
    
    
        https://doi.org/10.12688/f1000research.19630.2
        
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                    Peer Reviewers
                    
    Anna Kuosmanen;
    Robert A. Beagrie                    
            
                    
               
                    - Funders
 
                     - 
                       Simons Foundation
                     
 
                     - 
                       Carlsbergfondet
                     
 
                     - 
                       U.S. National Library of Medicine
                     
 
                     - 
                       W. M. Keck Foundation
                     
 
                     - 
                       National Institutes of Health
                     
 
                     - 
                       Australian Research Council
                     
 
                
             
        
        
        
 LATEST VERSION  PUBLISHED 29 Jul 2021
        
     
    
    
        https://doi.org/10.12688/f1000research.26459.1
        
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            Jenna Oberstaller,        
        
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            Guy W. Dayhoff II,        
        
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                     - 
                       University of South Florida
                     
 
                
             
        
        
        
 PUBLISHED 17 Dec 2020
        
     
    
    
        https://doi.org/10.12688/f1000research.23773.1
        
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    Istvan Albert;
    Yuriy Orlov                    
            
                    
               
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                     - 
                       National Institute of Neurological Disorders and Stroke
                     
 
                     - 
                       Eunice Kennedy Shriver National Institute of Child Health and Human Development
                     
 
                     - 
                       U.S. National Library of Medicine
                     
 
                     - 
                       National Cancer Institute
                     
 
                     - 
                       National Institutes of Health
                     
 
                     - 
                       National Institute of General Medical Sciences
                     
 
                
             
        
        
        
 PUBLISHED 16 Sep 2020
        
     
    
    
        https://doi.org/10.12688/f1000research.23180.2
        
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                    Peer Reviewers
                    
    Zichen Wang;
    Shannon Ellis                    
            
                    
               
                    - Funders
 
                     - 
                       National Library of Medicine, National Institutes of Health
                     
 
                     - 
                       Chan Zuckerberg Initiative
                     
 
                
             
        
        
        
 LATEST VERSION  PUBLISHED 04 Aug 2020
        
     
    
    
        https://doi.org/10.12688/f1000research.18236.1
        
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            Rutger A. Vos,        
        
            Toshiaki Katayama,        
        
            Hiroyuki Mishima,        
        
            Shin Kawano,        
        
            Shuichi Kawashima,        
        
            Jin-Dong Kim,        
        
            Yuki Moriya,        
        
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            Kazuharu Arakawa,        
        
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            Akira R. Kinjo,        
        
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            Masaaki Matsubara,        
        
            Joe Miyamoto,        
        
            Attayeb Mohsen,        
        
            Hiroshi Mori,        
        
            Yuki Naito,        
        
            Takeru Nakazato,        
        
            Jeremy Nguyen-Xuan,        
        
            Kozo Nishida,        
        
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            Tazro Ohta,        
        
            Shujiro Okuda,        
        
            Benedict Paten,        
        
            Jean-Luc Perret,        
        
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            Pjotr Prins,        
        
            Núria Queralt-Rosinach,        
        
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            Shinya Suzuki,        
        
            Tsuyosi Tabata,        
        
            Terue Takatsuki,        
        
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            Kazutoshi Yoshitake,        
        
            Akiyasu C. Yoshizawa,        
        
            Michel Dumontier,        
        
            Kenjiro Kosaki,        
        
            Toshihisa Takagi       
        
            
                    
                    Peer Reviewers
                    
    Jeremy G. Frey;
    James P. Balhoff                and    Gaurav Vaidya                    
            
                    
               
                    - Funder
 
                     - 
                       National Bioscience Database Center, the Japan Science and Technology Agency (JST)
                     
 
                
             
        
        
        
 PUBLISHED 24 Feb 2020
        
     
    
    
        https://doi.org/10.12688/f1000research.18238.1
        
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            Simon Kocbek,        
        
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            Yue Wang,        
        
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            Kiyoko F. Aoki-Kinoshita,        
        
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            Masaki Banno,        
        
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            Hidemasa Bono,        
        
            Jesualdo T. Fernández-Breis,        
        
            Robert Buels,        
        
            Matthew P. Campbell,        
        
            Hirokazu Chiba,        
        
            Peter J. A. Cock,        
        
            Kevin B. Cohen,        
        
            Michel Dumontier,        
        
            Takatomo Fujisawa,        
        
            Toyofumi Fujiwara,        
        
            Leyla Garcia,        
        
            Pascale Gaudet,        
        
            Emi Hattori,        
        
            Robert Hoehndorf,        
        
            Kotone Itaya,        
        
            Maori Ito,        
        
            Daniel Jamieson,        
        
            Simon Jupp,        
        
            Nick Juty,        
        
            Alex Kalderimis,        
        
            Fumihiro Kato,        
        
            Hideya Kawaji,        
        
            Takeshi Kawashima,        
        
            Akira R. Kinjo,        
        
            Yusuke Komiyama,        
        
            Masaaki Kotera,        
        
            Tatsuya Kushida,        
        
            James Malone,        
        
            Masaaki Matsubara,        
        
            Satoshi Mizuno,        
        
            Sayaka Mizutani,        
        
            Hiroshi Mori,        
        
            Yuki Moriya,        
        
            Katsuhiko Murakami,        
        
            Takeru Nakazato,        
        
            Hiroyo Nishide,        
        
            Yosuke Nishimura,        
        
            Soichi Ogishima,        
        
            Tazro Ohta,        
        
            Shujiro Okuda,        
        
            Hiromasa Ono,        
        
            Yasset Perez-Riverol,        
        
            Daisuke Shinmachi,        
        
            Andrea Splendiani,        
        
            Francesco Strozzi,        
        
            Shinya Suzuki,        
        
            Junichi Takehara,        
        
            Mark Thompson,        
        
            Toshiaki Tokimatsu,        
        
            Ikuo Uchiyama,        
        
            Karin Verspoor,        
        
            Mark D. Wilkinson,        
        
            Sarala Wimalaratne,        
        
            Issaku Yamada,        
        
            Nozomi Yamamoto,        
        
            Masayuki Yarimizu,        
        
            Shoko Kawamoto,        
        
            Toshihisa Takagi       
        
            
                    
                    Peer Reviewers
                    
    Todd J. Vision;
    João Moreira                    
            
                    
               
                    - Funder
 
                     - 
                       National Bioscience Database Center, the Japan Science and Technology Agency (JST)
                     
 
                
             
        
        
        
 PUBLISHED 23 Sep 2019
        
     
    
    
        https://doi.org/10.12688/f1000research.19140.1
        
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            Gloria C. Ferreira,        
        
            Jenna Oberstaller,        
        
            Renée Fonseca,        
        
            Thomas E. Keller,        
        
            Swamy Rakesh Adapa,        
        
            Justin Gibbons,        
        
            Chengqi Wang,        
        
            Xiaoming Liu,        
        
            Chang Li,        
        
            Minh Pham,        
        
            Guy W. Dayhoff II,        
        
            Linh M. Duong,        
        
            Luis Tañón Reyes,        
        
            Luciano Enrique Laratelli,        
        
            Douglas Franz,        
        
            Segun Fatumo,        
        
            ATM Golam Bari,        
        
            Audrey Freischel,        
        
            Lindsey Fiedler,        
        
            Omkar Dokur,        
        
            Krishna Sharma,        
        
            Deborah Cragun,        
        
            Ben Busby,        
        
            Rays H.Y. Jiang       
        
            
                    
                    Peer Reviewers
                    
    Karl E Anderson;
    Robert J. Desnick                    
            
                    
               
                    - Funders
 
                     - 
                       American Cancer Society
                     
 
                     - 
                       WHC
                     
 
                     - 
                       U.S. National Library of Medicine
                     
 
                     - 
                       University of South Florida
                     
 
                     - 
                       National Science Foundation
                     
 
                
             
        
        
        
 PUBLISHED 19 Jul 2019
        
     
    
    
        https://doi.org/10.12688/f1000research.16959.1
        
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        Hackathon-driven tutorial development
    
      
        [version 1; peer review: 1 approved, 1 approved with reservations]
      
         
                                
        
            Bruno M. Grande,        
        
            Arjun Baghela,        
        
            Anna Cavalla,        
        
            Florian Privé,        
        
            Peter Zhang,        
        
            Yisong Zhen       
        
            
                    
                    Peer Reviewers
                    
    Ming Tang;
    Brad A. Chapman                    
            
                
        
        
 PUBLISHED 24 Dec 2018
        
     
    
    
        https://doi.org/10.12688/f1000research.15895.2
        
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            Evan Biederstedt,        
        
            Jeffrey C. Oliver,        
        
            Nancy F. Hansen,        
        
            Aarti Jajoo,        
        
            Nathan Dunn,        
        
            Andrew Olson,        
        
            Ben Busby,        
        
            Alexander T. Dilthey       
        
            
                    
                    Peer Reviewers
                    
    Bjarni V. Halldorsson;
    Korbinian Schneeberger                and    Manish Goel                    
            
                    
               
                    - Funders
 
                     - 
                       U.S. National Library of Medicine
                     
 
                     - 
                       Jürgen Manchot Stiftung
                     
 
                     - 
                       National Institutes of Health
                     
 
                     - 
                       National Human Genome Research Institute
                     
 
                
             
        
        
        
 LATEST VERSION  PUBLISHED 10 Dec 2018
        
     
    
    
        https://doi.org/10.12688/f1000research.12781.1
        
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            Hsinyi Tsang,        
        
            Matthew Moss,        
        
            Greg Fedewa,        
        
            Sharif Farag,        
        
            Daniel Quang,        
        
            Alexey V. Rakov,        
        
            Ben Busby       
        
            
                    
                    Peer Reviewers
                    
    Torsten Seemann;
    Tom J. B. de Man                    
            
                    
               
                    - Funders
 
                     - 
                       U.S. National Library of Medicine
                     
 
                     - 
                       National Cancer Institute
                     
 
                
             
        
        
        
 PUBLISHED 08 Nov 2017
        
     
    
    
        https://doi.org/10.12688/f1000research.11389.2
        
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            Revised
    
        PubRunner: A light-weight framework for updating text mining results
    
      
        [version 2; peer review: 1 approved, 2 approved with reservations]
      
         
                                
        
            Kishore R. Anekalla,        
        
            J.P. Courneya,        
        
            Nicolas Fiorini,        
        
            Jake Lever,        
        
            Michael Muchow,        
        
            Ben Busby       
        
            
                    
                    Peer Reviewers
                    
    Jin-Dong Kim;
    Fabio Rinaldi;
    Julien Gobeill                    
            
                    
               
                    - Funders
 
                     - 
                       National Institutes of Health
                     
 
                     - 
                       Vanier Canada
                     
 
                
             
        
        
        
 LATEST VERSION  PUBLISHED 13 Oct 2017