Bioinformatics

Bioinformatics

Pathway Analysis

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1-6 of 6 ARTICLES
https://doi.org/10.12688/f1000research.135151.1
Research Article metrics
Developing potential drugs for insomnia through computational analysis
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers Khaled M. Darwish; Yousaf Khan
PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.122949.2
Software Tool Article metrics
Revised
DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data
[version 2; peer review: 2 approved]
Peer Reviewers Hélène Hirbec; Wenbin Guo
  • Funder
  • PhD fellowship from the CEA (Amont-Aval).
LATEST VERSION PUBLISHED 24 Mar 2023
https://doi.org/10.12688/f1000research.52026.2
Method Article metrics
Revised
A deep learning segmentation strategy that minimizes the amount of manually annotated images
[version 2; peer review: 2 approved]
Peer Reviewers Alice Lucas; Romain F Laine
  • Funder
  • Chan Zuckerberg Initiative
LATEST VERSION PUBLISHED 17 Jan 2022
https://doi.org/10.12688/f1000research.52412.2
Method Article metrics
Revised
A signaling pathway-driven bioinformatics pipeline for predicting therapeutics against emerging infectious diseases
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers José Pedro Cerón-Carrasco; Babatunde Joseph Oso; Soumya Lipsa Rath
  • Funder
  • Brigham Young University
LATEST VERSION PUBLISHED 20 Aug 2021
https://doi.org/10.12688/f1000research.28022.2
Software Tool Article metrics
Revised
BioPAN: a web-based tool to explore mammalian lipidome metabolic pathways on LIPID MAPS
[version 2; peer review: 3 approved]
Peer Reviewers Amaury Cazenave Gassiot; Phillip Whitfield; Ginger Milne
  • Funders
  • German Federal Ministry of Education and Research
  • Wellcome Trust
LATEST VERSION PUBLISHED 09 Jun 2021
https://doi.org/10.12688/f1000research.22391.1
Research Article metrics
Parent-child signals identify candidate cancer driver genes
[version 1; peer review: 2 approved with reservations]
Peer Reviewers Hilal Kazan; Alexander Lachmann
  • Funder
  • University of the West Indies
PUBLISHED 03 Feb 2021
1-6 of 6 ARTICLES
Gateway Areas
  • Methods and Tools
    The Methods and Tools Gateway Area will allow researchers to publish outputs concerning both the application and research into the use of various computational methods to analyse quantities of biological data for a range of different results, including predictions and discoveries. Read more keyboard_arrow_right
  • Genetics and Genomics
    The Genetics & Genomics Gateway Area will enable researchers to publish content related to the analysis, storage and accessibility of DNA, RNA and protein sequences. This analysis can be conducted in a variety of ways, including comparison of sequences and relationships, identification of functions, and recognition of patterns across the samples. Read more keyboard_arrow_right
  • Transcriptomics
    By curating all outputs related to the analysis of the RNA transcripts produced by a genotype, the Transcriptomics Gateway Area will allow readers to easily access content pertinent to this research. Read more keyboard_arrow_right
  • Proteomics
    The Proteomics Gateway Area has been established to allow authors to access and publish research content related to the large-scale study of entire sets of proteins as proteomes. Read more keyboard_arrow_right
  • Metagenomics
    This Gateway Area will allow members of the bioinformatics community to collate all research related to the collection of genomes from an environmental sample. Read more keyboard_arrow_right
  • Metabolomics
    The Metabolomics Gateway Area provides a location for all research related to the large-scale study of metabolites within cells and organisms, particularly with an emphasis on the chemical processes involving these molecules. Read more keyboard_arrow_right
  • Phylogenetics
    The Phylogenetics Gateway Area will present researchers with the opportunity to locate outputs related to the evolutionary relationship between species, genes or organisms, among other entities. Read more keyboard_arrow_right
  • Systems Biology
    The Systems Biology Gateway Area acts as a hub for the bioinformatics community to publish their outputs which has been produced using expansive data and computational and mathematical methodology and analysis to develop a holistic approach towards biological mechanisms. We encourage submitters to publish a plethora of content related to both technological advances in the field, and how these developments impact the wider bioinformatics community. Read more keyboard_arrow_right
  • Structural Bioinformatics
    This Gateway Area provides researchers with the opportunity to collate all relevant content related to the analysis and modelling of molecules to determine their role and function within a cell. Read more keyboard_arrow_right
  • Pathway Analysis
    The Pathway Analysis Gateway Area allows for researchers to locate and publish curated content related to this topic, in the use of tools to identify relationships using high-throughput datasets. Read more keyboard_arrow_right
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