Bioinformatics

Bioinformatics

track_changes Track Tracking Be alerted when new articles are added in this gateway (manage your tracking alerts via your account) Stop tracking this gateway
Home Gateways Bioinformatics
361-380 of 384 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.6037.2
Research Note metrics
Revised
Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes
[version 2; peer review: 2 approved]
Ron Ammar, Tara A. Paton, Dax Torti, Adam Shlien, Gary D. Bader
Peer Reviewers Martin Kennedy; Thomas Hoenen
LATEST VERSION PUBLISHED 20 May 2015
https://doi.org/10.12688/f1000research.6148.2
Research Article metrics
Revised
Theoretical modelling of epigenetically modified DNA sequences
[version 2; peer review: 2 approved]
Alexandra Teresa Pires Carvalho, Maria Leonor Gouveia, Charan Raju Kanna, Sebastian K. T. S. Wärmländer, Jamie Platts, Shina Caroline Lynn Kamerlin
Peer Reviewers Célia Fonseca Guerra; Katja Petzold
LATEST VERSION PUBLISHED 06 May 2015
https://doi.org/10.12688/f1000research.6038.1
Editorial metrics NOT PEER REVIEWED
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus
[version 1; peer review: not peer reviewed]
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
PUBLISHED 15 Jan 2015
https://doi.org/10.12688/f1000research.4510.2
Software Tool Article metrics
Revised
Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
[version 2; peer review: 2 approved]
Keiichiro Ono, Barry Demchak, Trey Ideker
Peer Reviewers Alexander Lex; Jose Villaveces
LATEST VERSION PUBLISHED 28 Oct 2014
https://doi.org/10.12688/f1000research.3928.2
Software Tool Article metrics
Update
edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens
[version 2; peer review: 3 approved]
Zhiyin Dai, Julie M. Sheridan, Linden J. Gearing, Darcy L. Moore, Shian Su, Sam Wormald, Stephen Wilcox, Liam O'Connor, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Peer Reviewers James W. MacDonald; Ross Lazarus; Sumit Deswal
LATEST VERSION PUBLISHED 21 Oct 2014
https://doi.org/10.12688/f1000research.5412.1
Software Tool Article metrics
Niche Genetic Algorithms are better than traditional Genetic Algorithms for de novo Protein Folding
[version 1; peer review: 2 not approved]
Michael Scott Brown, Tommy Bennett, James A. Coker
Peer Reviewers Nathan Alexander; Kenneth De Jong
PUBLISHED 07 Oct 2014
https://doi.org/10.12688/f1000research.4680.2
Software Tool Article metrics
Revised
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
[version 2; peer review: 2 approved]
Jean-Philippe Fortin, Elana Fertig, Kasper Hansen
Peer Reviewers Timothy J. Triche; Tiffany J. Morris
LATEST VERSION PUBLISHED 19 Sep 2014
https://doi.org/10.12688/f1000research.4431.2
Software Tool Article metrics
Revised
ReactomeFIViz: a Cytoscape app for pathway and network-based data analysis
[version 2; peer review: 2 approved]
Guanming Wu, Eric Dawson, Adrian Duong, Robin Haw, Lincoln Stein
Peer Reviewers Hamid Bolouri; Nikolaus Schultz and B. Arman Aksoy
LATEST VERSION PUBLISHED 12 Sep 2014
https://doi.org/10.12688/f1000research.4492.2
Software Tool Article metrics
Revised
Cytoscape: the network visualization tool for GenomeSpace workflows
[version 2; peer review: 3 approved]
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Peer Reviewers Aris Floratos; Gabriela Bindea and Bernhard Mlecnik; Jan Aerts
LATEST VERSION PUBLISHED 26 Aug 2014
https://doi.org/10.12688/f1000research.4996.1
Research Article metrics
SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
[version 1; peer review: 2 approved]
Jennifer Wyffels, Benjamin L. King, James Vincent, Chuming Chen, Cathy H. Wu, Shawn W. Polson
Peer Reviewers Kevin Feldheim; Ed Heist
PUBLISHED 12 Aug 2014
https://doi.org/10.12688/f1000research.4830.1
Software Tool Article metrics
Explain your data by Concept Profile Analysis Web Services
[version 1; peer review: 2 approved with reservations]
Kristina Hettne, Reinout van Schouwen, Eleni Mina, Eelke van der Horst, Mark Thompson, Rajaram Kaliyaperumal, Barend Mons, Erik van Mulligen, Jan A. Kors, Marco Roos
Peer Reviewers Karin Verspoor; Naoaki Okazaki
PUBLISHED 25 Jul 2014
https://doi.org/10.12688/f1000research.4572.1
Software Tool Article metrics
GeneMANIA: Fast gene network construction and function prediction for Cytoscape
[version 1; peer review: 2 approved]
Jason Montojo, Khalid Zuberi, Harold Rodriguez, Gary D. Bader, Quaid Morris
Peer Reviewers Giovanni Scardoni; Rosalba Giugno
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4521.1
Software Tool Article metrics
BridgeDb app: unifying identifier mapping services for Cytoscape
[version 1; peer review: 2 approved]
Jianjiong Gao, Chao Zhang, Martijn van Iersel, Li Zhang, Dong Xu, Nikolaus Schultz, Alexander R. Pico
Peer Reviewers Benno Schwikowski; Olivier Elemento
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4460.1
Software Tool Article metrics
enhancedGraphics: a Cytoscape app for enhanced node graphics
[version 1; peer review: 2 approved]
John H. Morris, Allan Kuchinsky, Thomas E. Ferrin, Alexander R. Pico
Peer Reviewers Lars Juhl Jensen; Piet Molenaar
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4536.1
Software Tool Article metrics
Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results
[version 1; peer review: 2 approved]
Ruth Isserlin, Daniele Merico, Veronique Voisin, Gary D. Bader
Peer Reviewers Nathan Salomonis; Florian Markowetz
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.4642.1
Editorial metrics NOT PEER REVIEWED
The Cytoscape app article collection
[version 1; peer review: not peer reviewed]
Alexander R Pico, Gary D Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William Longabaugh, Christian Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker
PUBLISHED 01 Jul 2014
https://doi.org/10.12688/f1000research.3-47.v2
Software Tool Article metrics
Revised
FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences
[version 2; peer review: 2 approved]
Leyla Garcia, Guy Yachdav, Maria-Jesus Martin
Peer Reviewers Jim Procter; Andreas Prlic
LATEST VERSION PUBLISHED 09 Apr 2014
https://doi.org/10.12688/f1000research.3-8.v2
Software Tool Article metrics
Revised
Validation of predicted mRNA splicing mutations using high-throughput transcriptome data
[version 2; peer review: 4 approved]
Coby Viner, Stephanie N. Dorman, Ben C. Shirley, Peter K. Rogan
Peer Reviewers Stefania Bortoluzzi; Francesc Xavier Roca; Liliana D. Florea; Peter N. Robinson
LATEST VERSION PUBLISHED 07 Apr 2014
https://doi.org/10.12688/f1000research.3-56.v1
Editorial metrics NOT PEER REVIEWED
The BioJS article collection of open source components for biological data visualisation
[version 1; peer review: not peer reviewed]
Manuel Corpas
PUBLISHED 13 Feb 2014
https://doi.org/10.12688/f1000research.3-54.v1
Software Tool Article metrics
DNAContentViewer a BioJS component to visualise GC/AT Content
[version 1; peer review: 2 approved with reservations]
Anil S. Thanki, Shabhonam Caim, Manuel Corpas, Robert P. Davey
Peer Reviewers Dan Schwartz and Joseph O'Shea; Matúš Kalaš
PUBLISHED 13 Feb 2014
361-380 of 384 ARTICLES
Previous Next
Gateway Areas
  • Methods and Tools
    The Methods and Tools Gateway Area will allow researchers to publish outputs concerning both the application and research into the use of various computational methods to analyse quantities of biological data for a range of different results, including predictions and discoveries. Read more keyboard_arrow_right
  • Genetics and Genomics
    The Genetics & Genomics Gateway Area will enable researchers to publish content related to the analysis, storage and accessibility of DNA, RNA and protein sequences. This analysis can be conducted in a variety of ways, including comparison of sequences and relationships, identification of functions, and recognition of patterns across the samples. Read more keyboard_arrow_right
  • Transcriptomics
    By curating all outputs related to the analysis of the RNA transcripts produced by a genotype, the Transcriptomics Gateway Area will allow readers to easily access content pertinent to this research. Read more keyboard_arrow_right
  • Proteomics
    The Proteomics Gateway Area has been established to allow authors to access and publish research content related to the large-scale study of entire sets of proteins as proteomes. Read more keyboard_arrow_right
  • Metagenomics
    This Gateway Area will allow members of the bioinformatics community to collate all research related to the collection of genomes from an environmental sample. Read more keyboard_arrow_right
ISCB News and Announcements open_in_new
Our Links
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.