There is no content matching your selection.
https://doi.org/10.12688/f1000research.144515.2
Opinion Article
metrics
Revised
Establishing the ELIXIR Microbiome Community
[version 2; peer review: 1 approved, 1 approved with reservations]
Robert D. Finn,
Bachir Balech,
Josephine Burgin,
Physilia Chua,
Erwan Corre,
Cymon J. Cox,
Claudio Donati,
Vitor Martins dos Santos,
Bruno Fosso,
John Hancock,
Katharina F. Heil,
Naveed Ishaque,
Varsha Kale,
Benoit J. Kunath,
Claudine Médigue,
Teresa Nogueira,
Evangelos Pafilis,
Graziano Pesole,
Lorna Richardson,
Monica Santamaria,
Nikolaos Strepis,
Tim Van Den Bossche,
Juan Antonio Vizcaíno,
Haris Zafeiropoulos,
Nils P. Willassen,
Eric Pelletier,
Bérénice Batut
Peer Reviewers
Charlie Pauvert;
Almut Heinken
- Funders
-
CnrBiomics
-
Fundação para a Ciência e a Tecnologia
-
ELIXIRxNextGenIT
-
National Research Fund Luxembourg
-
Research Foundation Flanders
-
Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 08 Sep 2025
https://doi.org/10.12688/f1000research.166538.1
Review
metrics
Marc C. Heuermann,
Pedro Barros,
Sebastian Beier,
Heidrun Gundlach,
Jorge Alvarez-Jarreta,
Keywan Hassani-Pak,
Patrick König,
Anne Fiebig,
Tim Godec,
Kristina Gruden,
Nadja Nolte,
Marko Petek,
Uwe Scholz,
Maja Zagorščak,
Klaas Vandepoele,
Michiel Van Bel
Peer Reviewers
Sunil Kumar Sahu;
Xiaoming Xie
- Funders
-
ELIXIR under the call for proposals on Biodiversity, Food Safety and Pathogens
-
Federal Ministry of Education and Research
PUBLISHED 28 Jul 2025
https://doi.org/10.12688/f1000research.146301.2
Opinion Article
metrics
Flora D'Anna,
Niclas Jareborg,
Mijke Jetten,
Minna Ahokas,
Pinar Alper,
Robert Andrews,
Korbinian Bösl,
Teresa D’Altri,
Daniel Faria,
Nazeefa Fatima,
Siiri Fuchs,
Clare Garrard,
Wei Gu,
Katharina F. Heil,
Yvonne Kallberg,
Flavio Licciulli,
Nils-Christian Lübke,
Ana M. P. Melo,
Ivan Mičetić,
Jorge Oliveira,
Anastasis Oulas,
Patricia M. Palagi,
Krzysztof Poterlowicz,
Xenia Perez-Sitja,
Patrick Ruch,
Susanna-Assunta Sansone,
Helena Schnitzer,
Celia van Gelder,
Thanasis Vergoulis,
Daniel Wibberg,
Ulrike Wittig,
Brane Leskošek,
Jiri Vondrasek,
Munazah Andrabi
Peer Reviewers
Jeff Christiansen;
Sara El Gebali
- Funders
-
ELIXIR-CONVERGE: European Union’s Horizon 2020 programme
-
FAIRplus: European Union’s Horizon 2020 programme
LATEST VERSION PUBLISHED 30 Sep 2024
https://doi.org/10.12688/f1000research.126734.2
Opinion Article
metrics
Revised
Systems Biology in ELIXIR: modelling in the spotlight
[version 2; peer review: 2 approved, 1 approved with reservations]
Vitor Martins dos Santos,
Mihail Anton,
Barbara Szomolay,
Marek Ostaszewski,
Ilja Arts,
Rui Benfeitas,
Victoria Dominguez Del Angel,
Elena Domínguez-Romero,
Polonca Ferk,
Dirk Fey,
Carole Goble,
Martin Golebiewski,
Kristina Gruden,
Katharina F. Heil,
Henning Hermjakob,
Pascal Kahlem,
Maria I. Klapa,
Jasper Koehorst,
Alexey Kolodkin,
Martina Kutmon,
Brane Leskošek,
Sébastien Moretti,
Wolfgang Müller,
Marco Pagni,
Tadeja Rezen,
Miguel Rocha,
Damjana Rozman,
David Šafránek,
William T. Scott,
Rahuman S. Malik Sheriff,
Maria Suarez Diez,
Kristel Van Steen,
Hans V Westerhoff,
Ulrike Wittig,
Katherine Wolstencroft,
Anze Zupanic,
Chris T. Evelo,
John M. Hancock
Peer Reviewers
Yoram Vodovotz;
Herbert Sauro;
Ioannis Androulakis
LATEST VERSION PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.133724.2
Opinion Article
metrics
Robert M. Waterhouse,
Anne-Françoise Adam-Blondon,
Bachir Balech,
Endre Barta,
Physilia Ying Shi Chua,
Valeria Di Cola,
Katharina F. Heil,
Graham M. Hughes,
Lars S. Jermiin,
Matúš Kalaš,
Jerry Lanfear,
Evangelos Pafilis,
Patricia M. Palagi,
Aristotelis C. Papageorgiou,
Joana Paupério,
Fotis Psomopoulos,
Niels Raes,
Josephine Burgin,
Toni Gabaldón
Peer Reviewers
Patrick Comer;
Abigail Benson and Stephen Formel;
Cher FY Chow
- Funders
-
Swiss State Secretariat for Education, Research and Innovation (SERI)
-
Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.74502.2
Opinion Article
metrics
Marvin Martens,
Rob Stierum,
Emma L. Schymanski,
Chris T. Evelo,
Reza Aalizadeh,
Hristo Aladjov,
Kasia Arturi,
Karine Audouze,
Pavel Babica,
Karel Berka,
Jos Bessems,
Ludek Blaha,
Evan E. Bolton,
Montserrat Cases,
Dimitrios Ε. Damalas,
Kirtan Dave,
Marco Dilger,
Thomas Exner,
Daan P. Geerke,
Roland Grafström,
Alasdair Gray,
John M. Hancock,
Henner Hollert,
Nina Jeliazkova,
Danyel Jennen,
Fabien Jourdan,
Pascal Kahlem,
Jana Klanova,
Jos Kleinjans,
Todor Kondic,
Boï Kone,
Iseult Lynch,
Uko Maran,
Sergio Martinez Cuesta,
Hervé Ménager,
Steffen Neumann,
Penny Nymark,
Herbert Oberacher,
Noelia Ramirez,
Sylvie Remy,
Philippe Rocca-Serra,
Reza M. Salek,
Brett Sallach,
Susanna-Assunta Sansone,
Ferran Sanz,
Haralambos Sarimveis,
Sirarat Sarntivijai,
Tobias Schulze,
Jaroslav Slobodnik,
Ola Spjuth,
Jonathan Tedds,
Nikolaos Thomaidis,
Ralf J.M. Weber,
Gerard J.P. van Westen,
Craig E. Wheelock,
Antony J. Williams,
Hilda Witters,
Barbara Zdrazil,
Anže Županič,
Egon L. Willighagen
Peer Reviewers
Christopher Southan;
Marta Eide
- Funders
-
Eesti Teadusagentuur
-
Bundesministerium für Bildung und Forschung
-
LIFE programme
-
Miguel Servet
-
Agence Nationale de la Recherche
-
Horizon 2020
-
Stiftelsen Forska Utan Djurförsök
-
Wellcome Trust
-
Umweltbundesamt
-
H2020 Marie Skłodowska-Curie Actions
-
European Regional Development Fund
LATEST VERSION PUBLISHED 03 Oct 2023
https://doi.org/10.12688/f1000research.51747.1
Opinion Article
metrics
The future of food and nutrition in ELIXIR
[version 1; peer review: 2 approved with reservations]
Bachir Balech,
Lorraine Brennan,
Enrique Carrillo de Santa Pau,
Duccio Cavalieri,
Susan Coort,
Domenica D’Elia,
Lars Ove Dragsted,
Tome Eftimov,
Chris T. Evelo,
Polonca Ferk,
Paul Finglas,
Agnese Gori,
John Hancock,
Matúš Kalaš,
Barbara Koroušić Seljak,
Carl Lachat,
Brane Leskošek,
Edoardo Pasolli,
Graziano Pesole,
Karl Presser,
Anna Sandionigi,
Monica Santamaria,
Duygu Dede Şener,
Maria Traka,
Guy Vergères,
Karin L. Zimmermann,
Jildau Bouwman
Peer Reviewers
Graham King;
Anu Bansal
PUBLISHED 25 Aug 2022
https://doi.org/10.12688/f1000research.122312.1
Opinion Article
metrics
Community-driven ELIXIR activities in single-cell omics
[version 1; peer review: 2 approved with reservations]
Paulo Czarnewski,
Ahmed Mahfouz,
Raffaele A. Calogero,
Patricia M. Palagi,
Laura Portell-Silva,
Asier Gonzalez-Uriarte,
Charlotte Soneson,
Tony Burdett,
Barbara Szomolay,
Pavankumar Videm,
Hans-Rudolf Hotz,
Irene Papatheodorou,
John M. Hancock,
Björn Grüning,
Wilfried Haerty,
Roland Krause,
Salvador Capella-Gutierrez,
Brane Leskošek,
Luca Alessandri,
Maddalena Arigoni,
Tadeja Rezen,
Alexander Botzki,
Polonca Ferk,
Jessica Lindvall,
Katharina F. Heil,
Naveed Ishaque,
Eija Korpelainen
Peer Reviewers
Xiao-Yang Zhao;
Feng Zhu
- Funders
-
ELIXIR
-
Knut och Alice Wallenbergs Stiftelse
PUBLISHED 29 Jul 2022
https://doi.org/10.12688/f1000research.24887.1
Opinion Article
metrics
David Salgado,
Irina M. Armean,
Michael Baudis,
Sergi Beltran,
Salvador Capella-Gutierrez,
Denise Carvalho-Silva,
Victoria Dominguez Del Angel,
Joaquin Dopazo,
Laura I. Furlong,
Bo Gao,
Leyla Garcia,
Dietlind Gerloff,
Ivo Gut,
Attila Gyenesei,
Nina Habermann,
John M. Hancock,
Marc Hanauer,
Eivind Hovig,
Lennart F. Johansson,
Thomas Keane,
Jan Korbel,
Katharina B. Lauer,
Steve Laurie,
Brane Leskošek,
David Lloyd,
Tomas Marques-Bonet,
Hailiang Mei,
Katalin Monostory,
Janet Piñero,
Krzysztof Poterlowicz,
Ana Rath,
Pubudu Samarakoon,
Ferran Sanz,
Gary Saunders,
Daoud Sie,
Morris A. Swertz,
Kirill Tsukanov,
Alfonso Valencia,
Marko Vidak,
Cristina Yenyxe González,
Bauke Ylstra,
Christophe Béroud
Peer Reviewers
Antonio Rausell;
Andrew Lonie
PUBLISHED 13 Oct 2020
https://doi.org/10.12688/f1000research.20559.1
Opinion Article
metrics
Christine Orengo,
Sameer Velankar,
Shoshana Wodak,
Vincent Zoete,
Alexandre M.J.J. Bonvin,
Arne Elofsson,
K. Anton Feenstra,
Dietland L. Gerloff,
Thomas Hamelryck,
John M. Hancock,
Manuela Helmer-Citterich,
Adam Hospital,
Modesto Orozco,
Anastassis Perrakis,
Matthias Rarey,
Claudio Soares,
Joel L. Sussman,
Janet M. Thornton,
Pierre Tuffery,
Gabor Tusnady,
Rikkert Wierenga,
Tiina Salminen,
Bohdan Schneider
Peer Reviewers
Sjoerd Jacob De Vries and Isaure Chauvot de Beauchene;
Silvio C.E Tosatto;
Roland L. Dunbrack;
Andras Fiser
PUBLISHED 22 Apr 2020
https://doi.org/10.12688/f1000research.20136.1
Opinion Article
metrics
Norman E. Davey,
M. Madan Babu,
Martin Blackledge,
Alan Bridge,
Salvador Capella-Gutierrez,
Zsuzsanna Dosztanyi,
Rachel Drysdale,
Richard J. Edwards,
Arne Elofsson,
Isabella C. Felli,
Toby J. Gibson,
Aleksandras Gutmanas,
John M. Hancock,
Jen Harrow,
Desmond Higgins,
Cy M. Jeffries,
Philippe Le Mercier,
Balint Mészáros,
Marco Necci,
Cedric Notredame,
Sandra Orchard,
Christos A. Ouzounis,
Rita Pancsa,
Elena Papaleo,
Roberta Pierattelli,
Damiano Piovesan,
Vasilis J. Promponas,
Patrick Ruch,
Gabriella Rustici,
Pedro Romero,
Sirarat Sarntivijai,
Gary Saunders,
Benjamin Schuler,
Malvika Sharan,
Denis C. Shields,
Joel L. Sussman,
Jonathan A. Tedds,
Peter Tompa,
Michael Turewicz,
Jiri Vondrasek,
Wim F. Vranken,
Bonnie Ann Wallace,
Kanin Wichapong,
Silvio C. E. Tosatto
Peer Reviewers
Iva Pritisanac and Julie Forman-Kay;
Osman Ugur Sezerman
- Funders
-
Vetenskapsrådet
-
BBSRC
-
European Molecular Biology Laboratory
-
Carlsberg Foundation Distinguished Fellowship
-
National Institutes of Health
-
Israel I-CORE Project
-
ELIXIR
-
Danmarks Grundforskningsfond
-
Instruct-ERIC
-
Swiss Federal Government
-
Marie Skłodowska-Curie
-
COST Action BM1405 NGP-net
-
Wellcome Trust
PUBLISHED 15 Oct 2019
https://doi.org/10.12688/f1000research.12342.2
Opinion Article
metrics
Revised
The future of metabolomics in ELIXIR
[version 2; peer review: 3 approved]
Merlijn van Rijswijk,
Charlie Beirnaert,
Christophe Caron,
Marta Cascante,
Victoria Dominguez,
Warwick B. Dunn,
Timothy M. D. Ebbels,
Franck Giacomoni,
Alejandra Gonzalez-Beltran,
Thomas Hankemeier,
Kenneth Haug,
Jose L. Izquierdo-Garcia,
Rafael C. Jimenez,
Fabien Jourdan,
Namrata Kale,
Maria I. Klapa,
Oliver Kohlbacher,
Kairi Koort,
Kim Kultima,
Gildas Le Corguillé,
Pablo Moreno,
Nicholas K. Moschonas,
Steffen Neumann,
Claire O’Donovan,
Martin Reczko,
Philippe Rocca-Serra,
Antonio Rosato,
Reza M. Salek,
Susanna-Assunta Sansone,
Venkata Satagopam,
Daniel Schober,
Ruth Shimmo,
Rachel A. Spicer,
Ola Spjuth,
Etienne A. Thévenot,
Mark R. Viant,
Ralf J. M. Weber,
Egon L. Willighagen,
Gianluigi Zanetti,
Christoph Steinbeck
Peer Reviewers
Charles F. Burant;
Carl Brunius;
Emmanuel Mikros
- Funder
-
Horizon 2020 Framework Programme
LATEST VERSION PUBLISHED 30 Oct 2017
https://doi.org/10.12688/f1000research.11751.1
Opinion Article
metrics
Juan Antonio Vizcaíno,
Mathias Walzer,
Rafael C. Jiménez,
Wout Bittremieux,
David Bouyssié,
Christine Carapito,
Fernando Corrales,
Myriam Ferro,
Albert J.R. Heck,
Peter Horvatovich,
Martin Hubalek,
Lydie Lane,
Kris Laukens,
Fredrik Levander,
Frederique Lisacek,
Petr Novak,
Magnus Palmblad,
Damiano Piovesan,
Alfred Pühler,
Veit Schwämmle,
Dirk Valkenborg,
Merlijn van Rijswijk,
Jiri Vondrasek,
Martin Eisenacher,
Lennart Martens,
Oliver Kohlbacher
Peer Reviewers
Felix Elortza;
Chuming Chen
PUBLISHED 13 Jun 2017
https://doi.org/10.12688/f1000research.10443.1
Method Article
metrics
Espen Mikal Robertsen,
Hubert Denise,
Alex Mitchell,
Robert D. Finn,
Lars Ailo Bongo,
Nils Peder Willassen
Peer Reviewers
Marla I. Trindade and Leonardo van Zyl;
Takashi Gojobori;
Anders Blomberg
- Funders
-
ELIXIR
-
EMBL-EBI
-
Universitetet i Tromsø
PUBLISHED 23 Jan 2017