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https://doi.org/10.12688/f1000research.25124.1
Research Article metrics
Global trends and current status in colistin resistance research: a bibliometric analysis (1973-2019)
[version 1; peer review: 2 approved]
Abdourahamane Yacouba, Ahmed Olowo-okere
Peer Reviewers David Lupande-Mwenebitu; Ismaeel Yunusa
PUBLISHED 31 Jul 2020
https://doi.org/10.12688/f1000research.21027.2
Method Article metrics
Revised
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL
[version 2; peer review: 3 approved]
Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
Peer Reviewers Andra Waagmeester; Ikuo Uchiyama; Tatsuya Kushida
  • Funders
  • Swiss National Research Programme 75 “Big Data”
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 22 Jul 2020
https://doi.org/10.12688/f1000research.24396.1
Data Note metrics
The complete genome sequence of Stevia rebaudiana, the Sweetleaf
[version 1; peer review: 2 approved, 1 approved with reservations]
Kathleen O'Neill, Stacy Pirro
Peer Reviewers Eric Lu Zhang; Andrew Miller; Dawson White
  • Funder
  • Iridian Genomes Inc
PUBLISHED 21 Jul 2020
https://doi.org/10.12688/f1000research.25235.1
Method Article metrics
Modelling structural rearrangements in proteins using Euclidean distance matrices
[version 1; peer review: 2 approved with reservations]
Aleix Lafita, Alex Bateman
Peer Reviewers Sergey Ovchinnikov; Henry Wolkowicz and Haesol Im
  • Funder
  • European Molecular Biology Laboratory
PUBLISHED 20 Jul 2020
https://doi.org/10.12688/f1000research.23427.2
Software Tool Article metrics
Revised
MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context
[version 2; peer review: 2 approved]
Julia Koblitz, Dietmar Schomburg, Meina Neumann-Schaal
Peer Reviewers Rachel Cavill; Bianca H. Habermann
  • Funder
  • Bundesministerium für Bildung und Forschung
LATEST VERSION PUBLISHED 17 Jul 2020
https://doi.org/10.12688/f1000research.24552.1
Research Article metrics
Ablations over transformer models for biomedical relationship extraction
[version 1; peer review: 2 approved with reservations]
Richard G Jackson, Erik Jansson, Aron Lagerberg, Elliot Ford, Vladimir Poroshin, Timothy Scrivener, Mats Axelsson, Martin Johansson, Lesly Arun Franco, Eliseo Papa
Peer Reviewers Yuan Li and Karin Verspoor; Jens Dörpinghaus
  • Funder
  • AstraZeneca
PUBLISHED 16 Jul 2020
https://doi.org/10.12688/f1000research.19161.2
Method Article metrics
Revised
Development of an informatics system for accelerating biomedical research.
[version 2; peer review: 2 approved]
Vivek Navale, Michele Ji, Olga Vovk, Leonie Misquitta, Tsega Gebremichael, Alison Garcia, Yang Fann, Matthew McAuliffe
Peer Reviewers Hyeoneui Kim; Timothy W. Clark
LATEST VERSION PUBLISHED 13 Jul 2020
https://doi.org/10.12688/f1000research.19894.2
Research Article metrics
Revised
Variable expression and silencing of CRISPR-Cas9 targeted transgenes identifies the AAVS1 locus as not an entirely safe harbour
[version 2; peer review: 2 approved, 1 not approved]
Jamie R. Bhagwan, Emma Collins, Diogo Mosqueira, Mine Bakar, Benjamin B. Johnson, Alexander Thompson, James G.W. Smith, Chris Denning
Peer Reviewers Carolyn Carr; Catherine M. Verfaillie and Yannan Fan; Sara Howden
  • Funders
  • Britain Israel Research and Academic Exchange Partnership
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
LATEST VERSION PUBLISHED 10 Jul 2020
https://doi.org/10.12688/f1000research.23598.2
Research Article metrics
Revised
Differential dynamics of early stages of platelet adhesion and spreading on collagen IV- and fibrinogen-coated surfaces
[version 2; peer review: 3 approved]
Melanie B. Horev, Yishaia Zabary, Revital Zarka, Simona Sorrentino, Ohad Medalia, Assaf Zaritsky, Benjamin Geiger
Peer Reviewers Sandra Citi; Kenneth Yamada; Ulrich Schwarz
  • Funders
  • Swiss National Science Foundation
  • European Research Council
  • Israel Science Foundation
  • Israeli Council for Higher Education (CHE)
LATEST VERSION PUBLISHED 03 Jul 2020
https://doi.org/10.12688/f1000research.24904.1
Editorial metrics NOT PEER REVIEWED
Making the most of genomic data with OMA
[version 1; peer review: not peer reviewed]
Natasha M. Glover
  • Funder
  • Swiss Institute of Bioinformatics
PUBLISHED 01 Jul 2020
https://doi.org/10.12688/f1000research.22280.2
Software Tool Article metrics
Revised
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
[version 2; peer review: 2 approved]
Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen
Peer Reviewers Magnus Palmblad; Ruth Isserlin
  • Funders
  • Innovationsfonden
  • Novo Nordisk Fonden
LATEST VERSION PUBLISHED 30 Jun 2020
https://doi.org/10.12688/f1000research.21539.5
Method Article metrics
Revised
Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria
[version 5; peer review: 1 approved, 2 approved with reservations]
Colby T. Ford, Daniel Janies
Peer Reviewers Sameer K. Antani; Jeremy Burrows; Alyssa E Barry and Myo Naung
  • Funder
  • University of North Carolina at Charlotte
LATEST VERSION PUBLISHED 25 Jun 2020
https://doi.org/10.12688/f1000research.18721.2
Research Article metrics
Revised
Mutation profiling of anaplastic ependymoma grade III by Ion Proton next generation DNA sequencing
[version 2; peer review: 2 approved]
Ejaz Butt, Sabra Alyami, Tahani Nageeti, Muhammad Saeed, Khalid AlQuthami, Abdellatif Bouazzaoui, Mohammad Athar, Zainularifeen Abduljaleel, Faisal Al-Allaf, Mohiuddin Taher
Peer Reviewers Luni Emdad; Firoz Ahmad
  • Funder
  • Umm-Al-Qura University
LATEST VERSION PUBLISHED 22 Jun 2020
https://doi.org/10.12688/f1000research.23605.1
Software Tool Article metrics
Chanjo: Clincal grade sequence coverage analysis
[version 1; peer review: 1 approved, 1 approved with reservations]
Robin Andeer, Måns Magnusson, Anna Wedell, Henrik Stranneheim
Peer Reviewers Ryan M. Layer and Michael Bradshaw; Ksenia Lavrichenko
  • Funders
  • Vetenskapsrådet
  • Kommunfullmäktige, Stockholms Stad
  • Karolinska Institutet
  • Knut och Alice Wallenbergs Stiftelse
PUBLISHED 16 Jun 2020
https://doi.org/10.12688/f1000research.24759.1
Editorial metrics NOT PEER REVIEWED
The NEUBIAS Gateway: a hub for bioimage analysis methods and materials
[version 1; peer review: not peer reviewed]
Beth A. Cimini, Simon F Nørrelykke, Marion Louveaux, Nataša Sladoje, Perrine Paul-Gilloteaux, Julien Colombelli, Kota Miura
  • Funder
  • European Cooperation in Science and Technology
PUBLISHED 16 Jun 2020
https://doi.org/10.12688/f1000research.22139.2
Software Tool Article metrics
Revised
scRepertoire: An R-based toolkit for single-cell immune receptor analysis
[version 2; peer review: 2 approved]
Nicholas Borcherding, Nicholas L. Bormann, Gloria Kraus
Peer Reviewers Lorenzo Drufuca, Raoul Jean Pierre Bonnal and Massimiliano Pagani; Tim Stuart and Raoul Jean Pierre Bonnal
  • Funder
  • National Cancer Institute
LATEST VERSION PUBLISHED 15 Jun 2020
https://doi.org/10.12688/f1000research.22433.1
Review metrics
Drug Therapies for the Management of Sickle Cell Disease
[version 1; peer review: 2 approved]
Parul Rai, Kenneth I. Ataga
Peer Reviewers Daniel E. Bauer; Yogen Saunthararajah
  • Funder
  • Food and Drug Administration
PUBLISHED 11 Jun 2020
https://doi.org/10.12688/f1000research.24218.1
Research Article metrics
Coronavirus disease 2019 drug discovery through molecular docking
[version 1; peer review: 1 approved, 2 approved with reservations]
Sweta Singh, Hector Florez
Peer Reviewers Elio Rodrigo Castillo; Fernando Yepes-Calderon; Pritha Ghosh
  • Funder
  • Universidad Distrital Francisco Jose de Caldas
PUBLISHED 03 Jun 2020
https://doi.org/10.12688/f1000research.21728.1
Research Article metrics
The application of multi-criteria decision analysis to inform in resource allocation
[version 1; peer review: 1 approved, 1 approved with reservations]
Carina Schey, Maarten Postma, Paul Krabbe, Goran Medic, Mark Connolly
Peer Reviewers Robert Brett McQueen; Olha Zaliska
PUBLISHED 26 May 2020
https://doi.org/10.12688/f1000research.23383.1
Study Protocol metrics
The Benefits and Risks of Iron interventionS in Children (BRISC) trial: Statistical analysis plan
[version 1; peer review: 2 approved]
Sabine Braat, Leila Larson, Julie A. Simpson, Mohammed Imrul Hasan, Jena Derakhshani Hamadani, Sheikh Jamal Hossain, Shamima Shiraji, Mohammad Saiful Alam Bhuiyan, Beverley-Ann Biggs, Sant-Rayn Pasricha
Peer Reviewers Deborah Ridout; Sonia Lewycka
  • Funder
  • National Health and Medical Research Council
PUBLISHED 22 May 2020
201-220 of 630 ARTICLES
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