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https://doi.org/10.12688/f1000research.54402.1
Data Note metrics
Genome of Serratia plymuthica UBCF_13, Insight into diverse unique traits
[version 1; peer review: 1 not approved]
Raudhatul Fatiah, Irfan Suliansyah, Djong Hon Tjong, Lily Syukriani, Roza Yunita, Robi Trivano, Nurefni Azizah, Jamsari Jamsari
Peer Reviewers Zulema Udaondo
  • Funders
  • General Directorate of Higher Education of Republic Indonesia
  • Universitas Andalas
PUBLISHED 18 Aug 2021
https://doi.org/10.12688/f1000research.54418.1
Software Tool Article metrics
Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality
[version 1; peer review: 2 approved]
Davide Albanese, Claudio Donati
Peer Reviewers Thomas S. B. Schmidt, Anthony Fullam and Askarbek Orakov; Denis Baurain
  • Funder
  • Autonomous Province of Trento (Accordo di Programma)
PUBLISHED 17 Aug 2021
https://doi.org/10.12688/f1000research.55090.1
Research Article metrics
Identification of microbial agents in tissue specimens of ocular and periocular sarcoidosis using a metagenomics approach
[version 1; peer review: 2 approved]
Amde Selassie Shifera, Christopher Pockrandt, Natalia Rincon, Yuchen Ge, Jennifer Lu, Ales Varabyou, Anne E. Jedlicka, Karen Sun, Alan L. Scott, Charles Eberhart, Jennifer E. Thorne, Steven L. Salzberg
Peer Reviewers Lynn M. Hassman; Eric B Suhler
  • Funder
  • Research to Prevent Blindness
PUBLISHED 17 Aug 2021
https://doi.org/10.12688/f1000research.55140.1
Method Article metrics
An in vitro model for the cultivation of polymicrobial biofilms under continuous-flow conditions
[version 1; peer review: 2 approved]
Thomas James O'Brien, Marwa Mohsen Hassan, Freya Harrison, Martin Welch
Peer Reviewers Daniel R. Neill; Lindsay R. Kalan
  • Funders
  • Medical Research Council
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • British Lung Foundation
  • Cystic Fibrosis Trust
PUBLISHED 13 Aug 2021
https://doi.org/10.12688/f1000research.53467.2
Method Article metrics
Revised
Whole genome sequencing of colonies derived from cannabis flowers and the impact of media selection on benchmarking total yeast and mold detection tools
[version 2; peer review: 2 approved]
Kevin McKernan, Yvonne Helbert, Liam Kane, Nathan Houde, Lei Zhang, Stephen McLaughlin
Peer Reviewers Cindy Orser; Zamir K. Punja
  • Funder
  • Medicinal Genomics
LATEST VERSION PUBLISHED 12 Aug 2021
https://doi.org/10.12688/f1000research.22673.2
Research Article metrics
Revised
Augmented ustekinumab dosing is needed to achieve clinical response in patients with anti-TNF refractory pediatric Crohn’s disease: a retrospective chart review
[version 2; peer review: 2 approved]
Phinga Do, John Andersen, Ashish Patel, Gaith Semrin, Luis Sifuentes-Dominguez, Phuong Luu, Bhaskar Gurram
Peer Reviewers Richard Kellermayer; Abdul Elkadri
LATEST VERSION PUBLISHED 09 Aug 2021
https://doi.org/10.12688/f1000research.50974.1
Research Article metrics
Determinants of preterm birth in public hospitals in central Ethiopia: an unmatched case-control study
[version 1; peer review: 1 approved, 1 approved with reservations]
Berhanu Senbeta Deriba, Agumas Fentahun Ayalew, Addis Adera Gebru
Peer Reviewers Eshetu E Chaka; Jenny Jung
  • Funder
  • Salale University
PUBLISHED 06 Aug 2021
https://doi.org/10.12688/f1000research.50858.1
Method Article metrics
Strategies for cellular deconvolution in human brain RNA sequencing data
[version 1; peer review: 1 approved, 1 approved with reservations]
Olukayode A. Sosina, Matthew N. Tran, Kristen R. Maynard, Ran Tao, Margaret A. Taub, Keri Martinowich, Stephen A. Semick, Bryan C. Quach, Daniel R. Weinberger, Thomas Hyde, Dana B. Hancock, Joel E. Kleinman, Jeffrey T. Leek, Andrew E. Jaffe
Peer Reviewers Kathryn Roeder and Jiebiao Wang; Arjun Bhattacharya
  • Funders
  • National Institute of Mental Health
  • National Institute on Drug Abuse
PUBLISHED 04 Aug 2021
https://doi.org/10.12688/f1000research.54071.1
Data Note metrics
Organizing knowledge to enable faster data interpretation in COVID-19 research
[version 1; peer review: 2 approved with reservations]
Joseph Hearnshaw, Marco Brandizi, Ajit Singh, Chris Rawlings, Keywan Hassani-Pak
Peer Reviewers Justin Reese; Keith Hall
  • Funder
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 30 Jul 2021
https://doi.org/10.12688/f1000research.24583.2
Case Report metrics
Revised
Case Report: Sudden cardiac death due to ventricular myocardial non-compaction
[version 2; peer review: 2 approved]
Syrine Mannoubi, Med Amin Mesrati, Ibn Hadj Amor Hassen, Taha Hasnaoui, Hiba Limem, Marwa Boussaid, Nouha Ben Abdejlil, Abir Aissaoui
Peer Reviewers Mokhles lajmi; Citrawati Dyah Kencono Wungu
LATEST VERSION PUBLISHED 29 Jul 2021
https://doi.org/10.12688/f1000research.52266.3
Research Article metrics
Revised
The Discrepancy between Clove and Non-Clove Cigarette Smoke-Promoted Candida albicans Biofilm Formation with Precoating RNA-aptamer
[version 3; peer review: 2 approved]
Boy Muchlis Bachtiar, Basri A. Gani, Astri Deviana, Nastiti Rilo Utami, Anissa Dien Andriyani, Endang Winiati Bachtiar
Peer Reviewers Samira Shirooie; Zamirah Zainal-Abidin
  • Funder
  • The Grant from Universitas Indonesia (PUTI Q1 2020)
LATEST VERSION PUBLISHED 29 Jul 2021
https://doi.org/10.12688/f1000research.19630.2
Software Tool Article metrics
Revised
A strategy for building and using a human reference pangenome
[version 2; peer review: 2 approved]
Bastien Llamas, Giuseppe Narzisi, Valerie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt, Peter Bradbury, Xian Chang, Chen-Shan Chin, Arkarachai Fungtammasan, Wayne E. Clarke, Alan Cleary, Jana Ebler, Jordan Eizenga, Jonas A. Sibbesen, Charles J. Markello, Erik Garrison, Shilpa Garg, Glenn Hickey, Gerard R. Lazo, Michael F. Lin, Medhat Mahmoud, Tobias Marschall, Ilia Minkin, Jean Monlong, Rajeeva L. Musunuri, Sagayamary Sagayaradj, Adam M. Novak, Mikko Rautiainen, Allison Regier, Fritz J. Sedlazeck, Jouni Siren, Yassine Souilmi, Justin Wagner, Travis Wrightsman, Toshiyuki T. Yokoyama, Qiandong Zeng, Justin M. Zook, Benedict Paten, Ben Busby
Peer Reviewers Anna Kuosmanen; Robert A. Beagrie
  • Funders
  • Simons Foundation
  • Carlsbergfondet
  • U.S. National Library of Medicine
  • W. M. Keck Foundation
  • National Institutes of Health
  • Australian Research Council
LATEST VERSION PUBLISHED 29 Jul 2021
https://doi.org/10.12688/f1000research.27898.2
Research Article metrics
Revised
Classification of small ruminant lentivirus subtype A2, subgroups 1 and 2 based on whole genome comparisons and complex recombination patterns
[version 2; peer review: 2 approved, 1 approved with reservations]
Aaron M. Dickey, Timothy P. L. Smith, Michael L. Clawson, Michael P. Heaton, Aspen M. Workman
Peer Reviewers Monika Olech; Carlos Loncoman; Jorge Hugo Calvo
  • Funder
  • Agricultural Research Service
LATEST VERSION PUBLISHED 26 Jul 2021
https://doi.org/10.12688/f1000research.52478.1
Research Article metrics
Regulatory landscapes of specific miRNAs are conserved between cell lines and primary tumors
[version 1; peer review: 1 approved, 1 approved with reservations]
Hanwen Zhu, Boting Ning
Peer Reviewers Chongzhi Zang; Vinayak C. Palve
PUBLISHED 22 Jul 2021
https://doi.org/10.12688/f1000research.55064.1
Brief Report metrics
Correlation between maternal variables and the onset and severity of preeclampsia
[version 1; peer review: 1 approved with reservations, 1 not approved]
Nafiu Amidu, Moses Banyeh, Stephen Justice Adusu
Peer Reviewers Jussara Mayrink; Johnbosco E Mamah
PUBLISHED 21 Jul 2021
https://doi.org/10.12688/f1000research.53196.1
Research Article metrics
Interpreting airborne pandemics spreading using fractal kinetics’ principles
[version 1; peer review: 2 approved, 1 approved with reservations]
Panos Macheras, Athanasios A. Tsekouras, Pavlos Chryssafidis
Peer Reviewers Raoul Kopelman; Jinjun Zhang; Juan J Nieto
  • Funder
  • ATHENA RESEARCH INSTITUTE
PUBLISHED 20 Jul 2021
https://doi.org/10.12688/f1000research.52100.2
Case Report metrics
Revised
Case Report: PsAPSASH syndrome: an alternative phenotype of syndromic hidradenitis suppurativa treated with the IL-17A inhibitor secukinumab
[version 2; peer review: 2 approved]
Georgios Nikolakis, Katja Kreibich, Aristeidis Vaiopoulos, Katarzyna Kaleta, Joud Talas, Markus Becker, Christos C. Zouboulis
Peer Reviewers Mathilde Daxhelet; Simone Garcovich
LATEST VERSION PUBLISHED 16 Jul 2021
https://doi.org/10.12688/f1000research.53652.1
Case Report metrics
Case Report: Reinfection of COVID-19, with second infection less severe
[version 1; peer review: 1 approved]
Nawar Jasim Alsalih, Zeayd Fadhil Saeed, Hazim Talib Thwiny, Ali Mosa Rashid Al-Yasari, Ahmed Waleed Dheyab Alnassar, James P. Hobkirk, Mohenned A. Alsaadawi
Peer Reviewers Aida B. Allawe
PUBLISHED 15 Jul 2021
https://doi.org/10.12688/f1000research.53338.1
Research Article metrics
Semen biomarker TEX101 predicts sperm retrieval success for men with testicular failure
[version 1; peer review: 2 approved with reservations]
Keith A Jarvi, Peter Schlegel, Christina Schiza, Andrei Drabovich, Susan Lau, Antoninus Soosaipillai, Dimitrios Korbakis, Davor Brinc, Brendan Mullen, Eleftherios Diamandis
Peer Reviewers Kristian Almstrup; Mohamed Mostafa Arafa
  • Funders
  • Physicians Services Incorporated Foundation
  • Canadian Institute of Health Research
PUBLISHED 14 Jul 2021
https://doi.org/10.12688/f1000research.27868.3
Method Article metrics
Revised
WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data
[version 3; peer review: 2 approved]
Konstantinos Geles, Domenico Palumbo, Assunta Sellitto, Giorgio Giurato, Eleonora Cianflone, Fabiola Marino, Daniele Torella, Valeria Mirici Cappa, Giovanni Nassa, Roberta Tarallo, Alessandro Weisz, Francesca Rizzo
Peer Reviewers Juan Pablo Tosar; Wen Yao
  • Funders
  • Italian Association for Cancer Research
  • Ministero dell’Istruzione, dell’Università e della Ricerca
  • Horizon 2020
  • Regione Campania
LATEST VERSION PUBLISHED 12 Jul 2021
201-220 of 2,028 ARTICLES
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