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https://doi.org/10.12688/f1000research.22725.1
Brief Report metrics PEER REVIEW DISCONTINUED
Sequence variation at 8q24.21 and risk of back pain
[version 1; peer review: 1 approved]
Frances M.K. Williams, Yakov A. Tsepilov, Maxim B. Freidin, Tatiana I. Shashkova, Pradeep Suri, Yurii S. Aulchenko
Peer Reviewers Lisbet Haglund
  • Funders
  • National Institute of Neurological Disorders and Stroke
  • National Heart, Lung, and Blood Institute
  • EU FP7 PainOMICS project
  • National Institutes of Health
  • National Human Genome Research Institute
  • Belgian Federal Science Policy Office
  • WELBIO
  • Federal Agency for Scientific Organizations
  • Horizon 2020
  • National Cancer Institute
  • National Institute of Mental Health
  • Russian Foundation for Basic Research
  • Belgian Medical Genomics Initiative
  • Ministry of Education and Science of the Russian Federation
  • National Institute on Drug Abuse
PUBLISHED 22 May 2020
https://doi.org/10.12688/f1000research.22355.1
Review metrics
Recent advances in understanding the neonatal microbiome
[version 1; peer review: 3 approved]
Matthew J. Dalby, Lindsay J. Hall
Peer Reviewers Avital Cher and Moran Yassour; Susanne Brix Pedersen; Omry Koren
  • Funders
  • Wellcome Trust
  • Institute Strategic Programme Gut Microbes and Health grant
PUBLISHED 22 May 2020
https://doi.org/10.12688/f1000research.21642.2
Software Tool Article metrics
Revised
Generalized EmbedSOM on quadtree-structured self-organizing maps
[version 2; peer review: 2 approved]
Miroslav Kratochvíl, Abhishek Koladiya, Jiří Vondrášek
Peer Reviewers Evan Newell and Hugh MacMilan; Nikolay Oskolkov
  • Funders
  • Institute of Organic Chemistry and Biochemistry of the CAS
  • Ministerstvo Školství, Mládeže a Tělovýchovy
  • European Regional Development Fund
LATEST VERSION PUBLISHED 19 May 2020
https://doi.org/10.12688/f1000research.13535.2
Method Article metrics
Revised
StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation
[version 2; peer review: 3 approved with reservations]
Simon G. Coetzee, Zachary Ramjan, Huy Q. Dinh, Benjamin P. Berman, Dennis J. Hazelett
Peer Reviewers Maxwell W. Libbrecht; Yongjin Park; Guillaume J. Filion
  • Funder
  • National Institutes of Health
LATEST VERSION PUBLISHED 07 May 2020
https://doi.org/10.12688/f1000research.23296.1
Review metrics
Energy metabolism and sources of oxidative stress in wooden breast - a review
[version 1; peer review: 1 approved, 1 approved with reservations]
Shawna M. Hubert, Giridhar Athrey
Peer Reviewers Casey Owens; Bruno Ronchi
PUBLISHED 01 May 2020
https://doi.org/10.12688/f1000research.20559.1
Opinion Article metrics
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
[version 1; peer review: 1 approved, 3 approved with reservations]
Christine Orengo, Sameer Velankar, Shoshana Wodak, Vincent Zoete, Alexandre M.J.J. Bonvin, Arne Elofsson, K. Anton Feenstra, Dietland L. Gerloff, Thomas Hamelryck, John M. Hancock, Manuela Helmer-Citterich, Adam Hospital, Modesto Orozco, Anastassis Perrakis, Matthias Rarey, Claudio Soares, Joel L. Sussman, Janet M. Thornton, Pierre Tuffery, Gabor Tusnady, Rikkert Wierenga, Tiina Salminen, Bohdan Schneider
Peer Reviewers Sjoerd Jacob De Vries and Isaure Chauvot de Beauchene; Silvio C.E Tosatto; Roland L. Dunbrack; Andras Fiser
  • Funder
  • ELIXIR
PUBLISHED 22 Apr 2020
https://doi.org/10.12688/f1000research.22624.1
Opinion Article metrics
Cancer cachexia has many symptoms but only one cause: anoxia
[version 1; peer review: 1 approved, 1 not approved]
Tomas Koltai
Peer Reviewers Marília Seelaender; Barry Laird
PUBLISHED 09 Apr 2020
https://doi.org/10.12688/f1000research.20715.2
Method Article metrics
Revised
Prediction of cell position using single-cell transcriptomic data: an iterative procedure
[version 2; peer review: 2 approved]
Andrés M. Alonso, Alejandra Carrea, Luis Diambra
Peer Reviewers Roosevelt Alves Da Silva; Pablo Meyer
LATEST VERSION PUBLISHED 09 Apr 2020
https://doi.org/10.12688/f1000research.21633.2
Brief Report metrics
Revised
The effects of microchipping C57BL/6N mice on standard phenotyping tests
[version 2; peer review: 2 approved]
R.S. Bains, H.L. Cater, M. Stewart, C.L. Scudamore, S.E. Wells
Peer Reviewers Jonathan M. Williams; Helmut Fuchs, Gregor Miller, Manuela Östereicher and Annemarie Zimprich
  • Funder
  • Medical Research Council
LATEST VERSION PUBLISHED 06 Apr 2020
https://doi.org/10.12688/f1000research.22639.1
Research Article metrics
Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
[version 1; peer review: 2 approved, 1 approved with reservations]
Andreas Halman, Alicia Oshlack
Peer Reviewers Elizabeth A. Worthey; Jan Radvanszky and Jaroslav Budiš; Maria Anisimova
  • Funder
  • National Health and Medical Research Council
PUBLISHED 23 Mar 2020
https://doi.org/10.12688/f1000research.17319.3
Research Article metrics
Revised
Biometric and genetic differences in kelabau (Osteochilus spp.) as revealed using cytochrome c oxidase subunit 1
[version 3; peer review: 3 approved]
Nur Asiah, Junianto Junianto, Ayi Yustiati, Sukendi Sukendi, Melta Rini Fahmi, Zainal A. Muchlisin, Muhamad Kadapi, Windarti Windarti
Peer Reviewers Indra Junaidi Zakaria; Ja’afar Nuhu Ja’afar; Jayasankar Pallipuram
  • Funder
  • Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
LATEST VERSION PUBLISHED 10 Mar 2020
https://doi.org/10.12688/f1000research.20981.3
Research Article metrics
Revised
Peptide arrays incubated with three collections of human sera from patients infected with mosquito-borne viruses
[version 3; peer review: 2 approved]
Maria del Pilar Martinez Viedma, Nurgun Kose, Leda Parham, Angel Balmaseda, Guillermina Kuan, Ivette Lorenzana, Eva Harris, James E. Crowe Jr., Brett E. Pickett
Peer Reviewers Salvatore De-Simone and David William Provance; Felix F. Loeffler
  • Funders
  • United States Agency for International Development
  • National Institutes of Health
  • Gates Foundation
LATEST VERSION PUBLISHED 28 Feb 2020
https://doi.org/10.12688/f1000research.21796.1
Review metrics
Recent advances in the role of plant metabolites in shaping the root microbiome
[version 1; peer review: 3 approved]
Richard P. Jacoby, Li Chen, Melina Schwier, Anna Koprivova, Stanislav Kopriva
Peer Reviewers Fabrice Roux; Philip Poole; Corné Pieterse
  • Funders
  • Horizon 2020 Marie Curie Sklodowska Action project
  • DFG
  • Humboldt Research Fellowship
PUBLISHED 26 Feb 2020
https://doi.org/10.12688/f1000research.20660.2
Software Tool Article metrics
Revised
microbiomeDASim: Simulating longitudinal differential abundance for microbiome data
[version 2; peer review: 2 approved]
Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
Peer Reviewers Leo Lahti; Kris Sankaran
LATEST VERSION PUBLISHED 26 Feb 2020
https://doi.org/10.12688/f1000research.18236.1
Opinion Article metrics
BioHackathon 2015: Semantics of data for life sciences and reproducible research
[version 1; peer review: 2 approved]
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Peer Reviewers Jeremy G. Frey; James P. Balhoff and Gaurav Vaidya
  • Funder
  • National Bioscience Database Center, the Japan Science and Technology Agency (JST)
PUBLISHED 24 Feb 2020
https://doi.org/10.12688/f1000research.21556.2
Software Tool Article metrics
Revised
SNPector: SNP inspection tool for diagnosing gene pathogenicity and drug response in a naked sequence
[version 2; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Peter T. Habib, Alsamman M. Alsamman, Sameh E. Hassanein, Ghada A. Shereif, Aladdin Hamwieh
Peer Reviewers Fakher Rahim; Ka-Chun Wong; Tim Kacprowski
LATEST VERSION PUBLISHED 20 Feb 2020
https://doi.org/10.12688/f1000research.18959.2
Review metrics
Revised
Recent advances in understanding of attention deficit hyperactivity disorder (ADHD): how genetics are shaping our conceptualization of this disorder
[version 2; peer review: 3 approved]
Tetyana Zayats, Benjamin M Neale
Peer Reviewers Mark Bellgrove; Sarah Kittel-Schneider; Pieter J Hoekstra
  • Funders
  • Gerstner Family Foundation
  • National Institute of Mental Health
LATEST VERSION PUBLISHED 12 Feb 2020
https://doi.org/10.12688/f1000research.22259.1
Method Article metrics
Fluent genomics with plyranges and tximeta
[version 1; peer review: 1 approved, 2 approved with reservations]
Stuart Lee, Michael Lawrence, Michael I. Love
Peer Reviewers Mark Dunning; PuXue Qiao, Ruqian Lyu and Davis J. McCarthy; Mickaël Mendez and Michael M. Hoffman
  • Funders
  • Department of Industry, Innovation, Science, Research and Tertiary Education, Australian Government
  • CSL Behring
  • National Institutes of Health
PUBLISHED 12 Feb 2020
https://doi.org/10.12688/f1000research.22182.1
Systematic Review metrics
A systematic review of non-randomised evaluations of strategies to improve participant recruitment to randomised controlled trials
[version 1; peer review: 2 approved, 2 approved with reservations, 1 not approved]
Heidi R Gardner, Loai Albarquoni, Adel El Feky, Katie Gillies, Shaun Treweek
Peer Reviewers Karen Bracken; Barbara Clyne; Emily Peckham; Geoff K Frampton; Lucy Beasant
  • Funders
  • University of Aberdeen
  • Medical Research Council
PUBLISHED 05 Feb 2020
https://doi.org/10.12688/f1000research.20835.1
Review metrics
The influence of host genetics on the microbiome
[version 1; peer review: 2 approved]
Alexandra Tabrett, Matthew W. Horton
Peer Reviewers Maggie R. Wagner; Rachael E. Antwis
  • Funders
  • ThinkSwiss - swissnex Network
  • Universität Zürich - URPP Evolution in Action
PUBLISHED 05 Feb 2020
221-240 of 630 ARTICLES
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