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 in 
https://doi.org/10.12688/f1000research.20446.2
Method Article metrics
Revised
Unsupervised gene selection for predicting cell spatial positions in the Drosophila embryo
[version 2; peer review: 1 approved, 1 approved with reservations, 3 not approved]
Yang Chen, Disheng Mao, Yuping Zhang, Zhengqing Ouyang
Peer Reviewers Xianwen Ren; Mark S. Cembrowski and Larissa Kraus; Yen-Chung Chen; Saumitra Dey Choudhury; Komal Kumar Bollepogu Raja
  • Funder
  • Univerisity of Connecitcut
LATEST VERSION PUBLISHED 07 Jun 2021
https://doi.org/10.12688/f1000research.52811.1
Software Tool Article metrics
Exploiting the DepMap cancer dependency data using the depmap R package
[version 1; peer review: 2 approved with reservations]
Theo Killian, Laurent Gatto
Peer Reviewers Katharina Imkeller; Ashir Borah and James M. McFarland
  • Funder
  • Université Catholique de Louvain
PUBLISHED 25 May 2021
https://doi.org/10.12688/f1000research.25148.2
Research Article metrics
Revised
First draft genome assembly of the desert locust, Schistocerca gregaria
[version 2; peer review: 3 approved]
Heleen Verlinden, Lieven Sterck, Jia Li, Zhen Li, Anna Yssel, Yannick Gansemans, Rik Verdonck, Michiel Holtof, Hojun Song, Spencer T. Behmer, Gregory A. Sword, Tom Matheson, Swidbert R. Ott, Dieter Deforce, Filip Van Nieuwerburgh, Yves Van de Peer, Jozef Vanden Broeck
Peer Reviewers Uwe Homberg; Surya Saha; Joshua B. Benoit
  • Funders
  • U.S. Department of Agriculture
  • University of Pretoria
  • KU Leuven
  • Fonds Wetenschappelijk Onderzoek
  • Universiteit Gent
  • Biotechnology and Biological Sciences Research Council
  • National Science Foundation
LATEST VERSION PUBLISHED 21 May 2021
https://doi.org/10.12688/f1000research.51433.1
Case Report metrics
Case Report: Guitarist’s cramp as the initial manifestation of dopa-responsive dystonia with a novel heterozygous GCH1 mutation
[version 1; peer review: 2 approved, 1 approved with reservations]
Takafumi Hasegawa, Tatsuhiko Hosaka, Ryuhei Harada, Ichiro Kawahata, Kyoko Hoshino, Naoto Sugeno, Akio Kikuchi, Masashi Aoki
Peer Reviewers Hiroshi Ichinose; Taku Hatano; Juei-Jueng Lin
  • Funders
  • The Kawano Masanori Memorial Foundation for Promotion of Pediatrics
  • Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.52141.1
Software Tool Article metrics AWAITING PEER REVIEW
Restriction site-associated DNA from Python-implemented Digestion Simulations (RApyDS): a companion tool for RAD sequencing experimental design
[version 1; peer review: awaiting peer review]
Kristianne Arielle Gabriel, Maria Rejane Nepacina, Francis Tablizo, Carlo Lapid, Mark Lenczner Mendoza, Daniella Jean Pamulaklakin, Jobeth Domingo, Marc Jermaine Pontiveros, Hannah Mae Magno, Joshua Gregor Dizon, El King Morado, Jan Michael Yap
Peer Reviewers Invited
  • Funder
  • Philippine Council for Industry, Energy and Emerging Technology Research and Development of the Department of Science and Technology
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.51874.1
Research Article metrics
Horizontal transfer and evolution of wall teichoic acid gene cassettes in Bacillus subtilis
[version 1; peer review: 1 approved, 2 approved with reservations]
Granger Sutton, Gary B. Fogel, Bradley Abramson, Lauren Brinkac, Todd Michael, Enoch S. Liu, Sterling Thomas
Peer Reviewers Jeffrey B. Jones; José Escudero; Patrick Eichenberger
  • Funders
  • IARPA
  • Office of the Director of National Intelligence
PUBLISHED 07 May 2021
https://doi.org/10.12688/f1000research.50738.2
Research Article metrics
Revised
Risk factors for major external structural birth defects among children in Kiambu County, Kenya: a case-control study
[version 2; peer review: 2 approved, 1 approved with reservations]
George N. Agot, Marshal M. Mweu, Joseph K. Wang'ombe
Peer Reviewers Yoseph Worku; Marcia L. Feldkamp; Rogath Kishimba
LATEST VERSION PUBLISHED 30 Apr 2021
https://doi.org/10.12688/f1000research.28608.2
Method Article metrics
Revised
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
[version 2; peer review: 2 approved]
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit J. Kunath, Phillip B. Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Peer Reviewers Caitlin Simopoulos; Won Kyong Cho
  • Funders
  • National Cancer Institute
  • University of Minnesota
  • National Science Foundation
LATEST VERSION PUBLISHED 19 Apr 2021
https://doi.org/10.12688/f1000research.28439.1
Data Note metrics
CFM: a database of experimentally validated protocols for chemical compound-based direct reprogramming and transdifferentiation
[version 1; peer review: 2 approved with reservations]
Alexey Sizykh, Khalimat Murtazalieva, Yulia Vyshkvorkina, Alexey Stupnikov, Yulia A. Medvedeva
Peer Reviewers Erdem B. Dashinimaev; Stephanie M. Willerth
  • Funder
  • Ministry of Science and Higher Education of the Russian Federation
PUBLISHED 16 Apr 2021
https://doi.org/10.12688/f1000research.38156.1
Research Article metrics
Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
[version 1; peer review: 2 approved]
Xiao Ma, Jeanine L. Olsen, Thorsten B.H. Reusch, Gabriele Procaccini, Dave Kudrna, Melissa Williams, Jane Grimwood, Shanmugam Rajasekar, Jerry Jenkins, Jeremy Schmutz, Yves Van de Peer
Peer Reviewers Jarkko Salojärvi; Vratislav Peska
  • Funder
  • the DOE-Joint Genome Institute, Berkeley, CA, USA
PUBLISHED 15 Apr 2021
https://doi.org/10.12688/f1000research.24818.3
Research Article metrics
Revised
β-lactamases (bla TEM, bla SHV, bla CTXM-1, bla VEB, bla OXA-1) and class C β-lactamases gene frequency in Pseudomonas aeruginosa isolated from various clinical specimens in Khartoum State, Sudan: a cross sectional study
[version 3; peer review: 2 approved]
Dina N. Abdelrahman, Aya A. Taha, Mazar M. Dafaallah, Alaa Abdelgafoor Mohammed, Abdel Rahim M. El Hussein, Ahmed I. Hashim, Yousif F. Hamedelnil, Hisham N. Altayb
Peer Reviewers Nobumichi Kobayashi; Muhammad Qasim
LATEST VERSION PUBLISHED 01 Apr 2021
https://doi.org/10.12688/f1000research.26828.1
Research Article metrics
Attitudes of healthy volunteers to genetic testing in phase 1 clinical trials
[version 1; peer review: 2 approved]
Sebastian Levesque, Thomas M. Polasek, Eric Haan, Sepehr Shakib
Peer Reviewers Martin D. Lewis; Colleen Aldous
PUBLISHED 30 Mar 2021
https://doi.org/10.12688/f1000research.28318.2
Research Article metrics
Revised
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim
[version 2; peer review: 3 approved]
Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux
Peer Reviewers Tanvi Honap; Miguel Viveiros and João Perdigão; Ola B. Brynildsrud
  • Funders
  • Swiss National Science Foundation
  • European Research Council
LATEST VERSION PUBLISHED 29 Mar 2021
https://doi.org/10.12688/f1000research.26771.2
Software Tool Article metrics
Revised
HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas
[version 2; peer review: 3 approved]
Tim O. Nieuwenhuis, Marc K. Halushka
Peer Reviewers Mazdak Salavati; Laurent Gatto; Yasin Kaymaz
  • Funders
  • National Heart, Lung, and Blood Institute
  • National Institutes of Health
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.22989.2
Systematic Review metrics
Revised
Nitride oxide synthase 3 and klotho gene polymorphisms in the pathogenesis of chronic kidney disease and age-related cognitive impairment: a systematic review and meta-analysis
[version 2; peer review: 2 approved]
Atma Gunawan, Jonny Karunia Fajar, Fredo Tamara, Aditya Indra Mahendra, Muhammad Ilmawan, Yeni Purnamasari, Dessy Aprilia Kartini, Eden Suryoiman Winoto, Efriko Septananda Saifillah, Dewi Sri Wulandari, Pratista Adi Krisna, Ema Dianita Mayasari, Tri Wahyudi Iman Dantara, Ramadi Satryo Wicaksono, Djoko Wahono Soeatmadji
Peer Reviewers Hongliang Zhang; Sang Won Park
LATEST VERSION PUBLISHED 19 Mar 2021
https://doi.org/10.12688/f1000research.23740.2
Research Article metrics
Revised
Morphological and genetic evaluation of the thumbprint emperor, Lethrinus harak (Forsskål, 1775) in the Pacific and Indian Oceans
[version 2; peer review: 2 approved, 2 approved with reservations]
Muhammad Afrisal, Yukio Iwatsuki, Andi Iqbal Burhanuddin
Peer Reviewers Jayasankar Pallipuram; Femy Mahmud Sahami; Arvind Kumar Dwivedi; Siti Azizah Mohd Nor
  • Funder
  • Direktorat Jenderal Pendidikan Tinggi
LATEST VERSION PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.27309.1
Data Note metrics
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula
[version 1; peer review: 2 approved with reservations]
Harold B. White, Stacy Pirro
Peer Reviewers Hu Li; Shuai Zhan
  • Funder
  • Iridian Genomes
PUBLISHED 16 Mar 2021
https://doi.org/10.12688/f1000research.51479.1
Brief Report metrics
Most Japanese individuals are genetically predisposed to recognize an immunogenic protein fragment shared between COVID-19 and common cold coronaviruses
[version 1; peer review: 2 approved, 1 approved with reservations]
Johannes M. Dijkstra, Aaron P. Frenette, Brian Dixon
Peer Reviewers Brian M. Baker; Andrea J. Sant; Anna Gil
PUBLISHED 10 Mar 2021
https://doi.org/10.12688/f1000research.27532.2
Brief Report metrics
Revised
Genome-wide screening of upstream transcription factors using an expression library
[version 2; peer review: 2 approved]
Naoya Yahagi, Yoshinori Takeuchi
Peer Reviewers Kazuhiko Igarashi; Harukazu Suzuki
  • Funders
  • Suzuken Memorial Foundation
  • SENSHIN Medical Research Foundation
  • Japan Foundation for Applied Enzymology
  • Ministry of Education, Culture, Sports, Science and Technology
  • Uehara Memorial Foundation
  • Naito Foundation
  • Okinaka Memorial Institute for Medical Research
  • Takeda Science Foundation
  • Japan Heart Foundation
  • Kanae Foundation for the Promotion of Medical Science
  • Ono Medical Research Foundation
  • Nakatani Foundation for Advancement of Measuring Technologies in Biomedical Engineering
  • Senri Life Science Foundation
LATEST VERSION PUBLISHED 08 Mar 2021
https://doi.org/10.12688/f1000research.25019.2
Brief Report metrics
Revised
H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes
[version 2; peer review: 2 approved]
Andrew W. Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M. Luscombe
Peer Reviewers Haiyang Feng; Shigeki Fujiwara
LATEST VERSION PUBLISHED 01 Mar 2021
241-260 of 2,038 ARTICLES
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