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https://doi.org/10.12688/f1000research.28608.2
Method Article metrics
Revised
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
[version 2; peer review: 2 approved]
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit J. Kunath, Phillip B. Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap
Peer Reviewers Caitlin Simopoulos; Won Kyong Cho
  • Funders
  • National Cancer Institute
  • University of Minnesota
  • National Science Foundation
LATEST VERSION PUBLISHED 19 Apr 2021
https://doi.org/10.12688/f1000research.52192.1
Editorial metrics NOT PEER REVIEWED
Expanding the Chemical Information Science gateway
[version 1; peer review: not peer reviewed]
José L. Medina-Franco
PUBLISHED 16 Apr 2021
https://doi.org/10.12688/f1000research.27372.2
Brief Report metrics
Revised
Image analysis method for heterogeneity and porosity characterization of biomimetic hydrogels
[version 2; peer review: 2 approved]
Maryam Jamshidi, Cavus Falamaki
Peer Reviewers Miroslava Dušková-Smrčková; Susana Rocha
LATEST VERSION PUBLISHED 12 Apr 2021
https://doi.org/10.12688/f1000research.51357.1
Method Article metrics
COVID-19 and digital transformation: developing an open experimental testbed for sustainable and innovative environments using Fuzzy Cognitive Maps
[version 1; peer review: 1 approved, 2 approved with reservations]
Wolfgang Höhl
Peer Reviewers Peter Zeile; Tamás Molnár; Chrysostomos Stylios
  • Funder
  • TUM Publishing Fund for Open Access Publishing
PUBLISHED 01 Apr 2021
https://doi.org/10.12688/f1000research.36775.1
Opinion Article metrics
Proposal of a novel Artificial Intelligence Distribution Service platform for healthcare
[version 1; peer review: 2 approved]
Antti Väänänen, Keijo Haataja, Katri Vehviläinen-Julkunen, Pekka Toivanen
Peer Reviewers Marko Jäntti; Lorenzo Faggioni
  • Funder
  • Digiteknologian TKI-ymparistö project (ERDF, Regional Council of Pohjois-Savo)
PUBLISHED 26 Mar 2021
https://doi.org/10.12688/f1000research.25447.2
Software Tool Article metrics
Revised
DEVILS: a tool for the visualization of large datasets with a high dynamic range
[version 2; peer review: 2 approved]
Romain Guiet, Olivier Burri, Nicolas Chiaruttini, Olivier Hagens, Arne Seitz
Peer Reviewers Sebastien Tosi; Mehedi Masud
  • Funder
  • Norges Forskningsråd
LATEST VERSION PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.51916.1
Software Tool Article metrics
CytoBrowser: a browser-based collaborative annotation platform for whole slide images
[version 1; peer review: 1 approved with reservations, 1 not approved]
Christopher Rydell, Joakim Lindblad
Peer Reviewers Simon Nørrelykke; Peter Bankhead
  • Funder
  • Sweden’s Innovation Agency, VINNOVA
PUBLISHED 22 Mar 2021
https://doi.org/10.12688/f1000research.23316.3
Brief Report metrics
Revised
Use of routinely collected data in a UK cohort of publicly funded randomised clinical trials
[version 3; peer review: 2 approved]
Andrew J. McKay, Ashley P. Jones, Carrol L. Gamble, Andrew J. Farmer, Paula R. Williamson
Peer Reviewers Sharon Love; Alison H Howie and Merrick Zwarenstein
  • Funders
  • National Institute for Health Research
  • NIHR Oxford Biomedical Research Centre
  • Medical Research Council
LATEST VERSION PUBLISHED 12 Mar 2021
https://doi.org/10.12688/f1000research.26353.2
Research Article metrics
Revised
Use of social media in the marketing of agricultural products and farmers’ turnover in South-South Nigeria
[version 2; peer review: 2 approved, 1 approved with reservations]
Henry Inegbedion, Emmanuel Inegbedion, Abiola Asaleye, Eseosa Obadiaru, Femi Festus Asamu
Peer Reviewers Lauri M Baker; Philip Olasupo Alege; Dr.K. Lokeswari
  • Funder
  • Landmark University Centre for Research and Development
LATEST VERSION PUBLISHED 12 Mar 2021
https://doi.org/10.12688/f1000research.29977.1
Opinion Article metrics
Conducting qualitative research during COVID-19: reflections on methods and challenges when interviewing marginalized refugee women
[version 1; peer review: 1 approved with reservations, 1 not approved]
Adelaide M. Lusambili, Sharon Ochieng, Mary M. Nyikuri, Constance S. Shumba
Peer Reviewers Sukhjeet Bains; Khangelani Moyo
  • Funders
  • Aga Khan University
  • International Organisation of Migration
PUBLISHED 11 Mar 2021
https://doi.org/10.12688/f1000research.27384.1
Software Tool Article metrics
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features
[version 1; peer review: 1 approved with reservations, 1 not approved]
Derek Reiman, Ahmed Metwally, Jun Sun, Yang Dai
Peer Reviewers Braden T Tierney; Boyang JI
PUBLISHED 09 Mar 2021
https://doi.org/10.12688/f1000research.25877.2
Software Tool Article metrics
Revised
Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning
[version 2; peer review: 1 approved, 1 approved with reservations]
Caitlin E. Coombes, Zachary B. Abrams, Samantha Nakayiza, Guy Brock, Kevin R. Coombes
Peer Reviewers Julia Wrobel; Justin Mower and Andrew Zimolzak
  • Funders
  • National Center for Advancing Translational Sciences
  • National Cancer Institute
LATEST VERSION PUBLISHED 05 Mar 2021
https://doi.org/10.12688/f1000research.26347.2
Software Tool Article metrics
Revised
TicTimer Web: software for measuring tic suppression remotely
[version 2; peer review: 2 approved]
Jonathan K. Black, Jonathan M. Koller, Kevin J. Black
Peer Reviewers Jennifer Schild and Matthew W. Specht; Valerie Brandt
  • Funder
  • National Institute of Mental Health
LATEST VERSION PUBLISHED 03 Mar 2021
https://doi.org/10.12688/f1000research.26669.2
Software Tool Article metrics
Revised
TreeSummarizedExperiment: a S4 class for data with hierarchical structure
[version 2; peer review: 3 approved]
Ruizhu Huang, Charlotte Soneson, Felix G.M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson
Peer Reviewers Leo Lahti; Shila Ghazanfar; Matthew Ritchie
  • Funders
  • University Research Priority Program Evolution in Action at the University of Zurich
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • Chan Zuckerberg Initiative DAF
LATEST VERSION PUBLISHED 02 Mar 2021
https://doi.org/10.12688/f1000research.50937.1
Research Article metrics
The importance of mentorship and collaboration for scientific capacity-building and capacity-sharing: perspectives of African scientists
[version 1; peer review: 1 approved with reservations]
Heather E. Burgess, Joanna Chataway
Peer Reviewers Elaine Byrne
PUBLISHED 01 Mar 2021
https://doi.org/10.12688/f1000research.40668.1
Software Tool Article metrics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
[version 1; peer review: 2 approved]
Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll
Peer Reviewers Molly Hannigan and Christopher Nicchitta; Jordan A. Berg
  • Funders
  • The Emmes Company
  • National Institutes of Allergy and Infectious Disease
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.50798.1
Software Tool Article metrics
Interactive biomedical segmentation tool powered by deep learning and ImJoy
[version 1; peer review: 1 approved, 1 approved with reservations]
Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg
Peer Reviewers Jean-Yves Tinevez and Dmitry Ershov; Jan Funke
  • Funders
  • Knut and Alice Wallenberg Foundation
  • Swedish Research Council
  • LST Platform at KTH Royal Institute of Technology
PUBLISHED 24 Feb 2021
https://doi.org/10.12688/f1000research.24714.3
Brief Report metrics
Revised
biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab
[version 3; peer review: 2 approved]
Choumouss Kamoun, Julien Roméjon, Henri de Soyres, Apolline Gallois, Elodie Girard, Philippe Hupé
Peer Reviewers Bernard Pope; Julia Ponomarenko
  • Funder
  • Institut National Du Cancer
LATEST VERSION PUBLISHED 19 Feb 2021
https://doi.org/10.12688/f1000research.50887.1
Data Note metrics
Development of the Wits Face Database: an African database of high-resolution facial photographs and multimodal closed-circuit television (CCTV) recordings
[version 1; peer review: 2 approved]
Nicholas Bacci, Joshua Davimes, Maryna Steyn, Nanette Briers
Peer Reviewers Ching-Yiu Jessica Liu; Won-Joon Lee
  • Funders
  • J.J.J. Smieszeck Fellowship, School of Anatomical Sciences, University of the Witwatersrand
  • National Research Foundation (South Africa)
PUBLISHED 19 Feb 2021
https://doi.org/10.12688/f1000research.27140.2
Software Tool Article metrics
Revised
Effective image visualization for publications – a workflow using open access tools and concepts
[version 2; peer review: 2 approved]
Christopher Schmied, Helena Klara Jambor
Peer Reviewers Guillaume Jacquemet; Georgina Fletcher and David Barry
  • Funder
  • Deutsche Krebshilfe
LATEST VERSION PUBLISHED 18 Feb 2021
341-360 of 1,016 ARTICLES
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